Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva14g00384 atgccCGCCAGTTTAGAACCGTTAGATTTGGGGGTTCAGATTCCTTACCACTTCAGATGTCCGATTTCCCTGGAGTTGATGCGCGACCCGGTTACCGTATGCACGGGTCAGACCTACGACCGAACCAGCATCGAGTCATGGGTCGCAACCGGCAACATCACCTGCCCCGTCACTCGAGCCACTCTCGCCGACCTCACTCTTATACCCAACCACACTCTTCGCCGCCTTATCCAAGACTGGTGTGTCGCCAACCGGGCCTTCGGAATTGAGCGGATCCCCACTCCCAAACAACCCGCCGACCCGGCTTTGGTCCGCTCATTATTGAACCAGGCTTCTTCCCAATCTGGTCCTCAACCATCGCGTCTCTCTGCTCTTCGTCGGCTTAGAGGACTCGCCCGTGACTCGGATAAAAACCGGTCTCTCATTGCGTCCCACAACGTTCGTGAAATCCTCctctcaattttattctcCAACACCACTCCGGAGTCATGCGAATTGAATCACGAGTCACTCGCTCTGCTCGTTATGTTTCCGCTCGCAGACTCTGAATGTGCGTCCGTCGCATCCCACCCAGACAGAATCAATTACCTGTCGCGTCTCCTTTTTCATCCTTCAATAGACGTCCGAGTTAACTCGGCAGCTCTTATCGAAATAGTGGTCGCCGGAACTCGTTCGCCGGAGCTACGAGCTCAAATAAGCAATATTGACGAAATTTATGAAGGAGTGAttgatattttgaagaatCCAATTTCGTATCCTCGCTCTCTCAAGATTGGCATCAAGGCTTTATTTGCTCTGTGCTTAGTGAAACAGACAAGGCATAAGGCCGTGTTAGCCGGAGCACCGGAGATTCTCGTCGACCGGCTACCGGATTTCGAGAAATGCGACGCGGAGAGAGCGTTGGCCACAATTGAATTGCTTTGTAGAATCCCGTCGGGATGTGCGGCATTTGCAGGGCACGCGCTGACGGTGCCTCTGTTGGTGAAAATAATACTCAAGATATCGGACCGGGCGACGGAGTACGCCGCCGGAGCACTGTTATCGCTGTGCTCTGAATCGGAGCAGAGTCAGAAAGAGGCGGTGGCGGCAGGTGTGTTGACTCAGCTGCTATTGCTGGTACAGAGCGATTGCACGGAGAGAGCAAAGAGGAAGGCGCAGCTGTTGCTGAAGCTACTTCGGGATTCGTGGCCTCAAGATTCCATGGGAAATTCTGACGATTTTGCACGAAGCGAGGTTGTACTACCATTTTG 1250 0.5192 MPASLEPLDLGVQIPYHFRCPISLELMRDPVTVCTGQTYDRTSIESWVATGNITCPVTRATLADLTLIPNHTLRRLIQDWCVANRAFGIERIPTPKQPADPALVRSLLNQASSQSGPQPSRLSALRRLRGLARDSDKNRSLIASHNVREILLSILFSNTTPESCELNHESLALLVMFPLADSECASVASHPDRINYLSRLLFHPSIDVRVNSAALIEIVVAGTRSPELRAQISNIDEIYEGVIDILKNPISYPRSLKIGIKALFALCLVKQTRHKAVLAGAPEILVDRLPDFEKCDAERALATIELLCRIPSGCAAFAGHALTVPLLVKIILKISDRATEYAAGALLSLCSESEQSQKEAVAAGVLTQLLLLVQSDCTERAKRKAQLLLKLLRDSWPQDSMGNSDDFARSEVVLPF 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva14g00384 416 SUPERFAMILY ARM repeat 103 392 IPR016024 -
Bva14g00384 416 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 413 - -
Bva14g00384 416 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Bva14g00384 416 CDD RING-Ubox_PUB 18 59 IPR045210 -
Bva14g00384 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 87 IPR013083 -
Bva14g00384 416 Gene3D - 317 416 IPR011989 -
Bva14g00384 416 Gene3D - 102 316 IPR011989 -
Bva14g00384 416 SUPERFAMILY RING/U-box 12 90 - -
Bva14g00384 416 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
Bva14g00384 416 PANTHER WDSAM1 PROTEIN 4 413 IPR045185 GO:0061630
Bva14g00384 416 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva14g00384 Bva-Chr14 1912673 1914260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva14g00384 1 416 U-box Gene Family AT1G49780 69.431 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva14g00384 - - jre:108988933 659.833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva14g00384 14 1912673 1914260 Bva14g00384 14 1912673 1914260 ECH