LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva14g00275	ATGGCAGACAATAGTCCTGACAACATCTATTCTTCACCGAATTCAAATTCACCACCTTCACCCAACAATGATTATGATAATGCAGACGACTCGCCACCGTCCCCACCATCATCAAATAAATCTTCACCGCCGTCGCCTCCGCCACCCCCACTTGGTAATGATAATGAGGAATCACCACCCCCACCCAATCAAGGTTCCGATGACAAAAATGGTAAAAACTCTCCTGCTTCTTCTAACGATGGCGACGGAAGGAAATCAACACCTTCAATGTCGTCAACAAACTCGTCTGAAAAAGATCACGCACCTAAACCTCATAAATTGTCTCCATCAGAACGCAATTCAACACCTAGCCCATCTTCTTCAGATTCGTCACCGTCAGGGGGCGGTTCTGAAAATGCGTTAAGTGTAAATGCTATAATAGGAATAGCTGTTGGAGCTGGGGTGTTGATTCTTCTCATAATACTATTGGTCTATTGTTGTTccagaaagaagaagaaatctaAGAATGTTCATTACTACCCTACTCATCCTGGTCAagATGATGAGTTTTACAAACACGCAAAACCTCCAAATCATCAACAGTGGAATAATGGCAGTGATCACGTTATGAGTATGCCACCAGCCCCAGGTGGAGCTCAAAAAAACTGGGGGACACCACCCCATCTCCATCAGATGCCTAGCAGTGACATGAGCAACGCTAGTTATTCTGGCCCACATGGTCCCGTATTACCCCCTCCACACCCTTCAGTGGCTCTTGGATTTAATAAGAGCACATTCTCTTTCGAAGAGCTATCAGCTGCTACTGGTGGCTATGCCTCAAGTAGTCTGTTGGGTCAAGGTGGGTTCGGCTATGTGCACAAAGGTGTGTTACCTAATGGTAAAGAGATAGCTGTGAAGAGTCTCAAATCTACTGGAGGCCAAGGAGACAGAGAATTTCAAGCCGAGGTTGAGATTATCAGCCGTGTTCACCATCGTCATCTTGTGTCACTTGTTGGCTACGCCATTTCAGAAAGCCAAAAATTATTGGTGTATGAATTTGTGCCTAACAAAACCCTTGAATACCACCTTCACGGAAAGGGTCGTCCTGTTATGGATTGGGGCACTAGGCTCAAAATTGCGATTGGATCAGCAAAAGGACTTGCTTACCTGCATGAGGATTGTCACCCTCGTATCATTCATCGGGACATAAAGGCTGCAAACATTCTAATCGAAGACAATTTTGAAGCGAAGGTGGCAGATTTTGGATTGGCCAAGTTTAATGCTGATATGGACACTCATGTTTCCACTCGCGTAATGGGAACATTTGGGTATTTGGCTCCTGAGTATGCATCCAGCGGTAAGTTAAGTGAGAAGTCTGATGTCTTCTCATACGGTATTATGCTTTTGGAGTTGATAACGGGACGACGGCCTATAGATACCACCGGCGAATATGAAGATGATAGCTTAGTTGACTGGGCTAGACCTCTATGTATAAACGCAATGGAAACTGGAAACTTTGAAGGACTGGTAGATCCACGCTTggagaaaaattatgatagGAATGAGATGGCACGCATGATAGCTTGTGCTAGTGCAAGCGTAAGACACTCGGCAAGAAAGCGACCAAAAATGAGCCAGatTGTACGTGCATTGGAGGGTGATGTCTCGTTGGATGACTTAAGTGAAGGGGGAGTGAAACCTGGCCAAAGTACAGTCTTTGGTACTGGTCCTAGTGGTGAATATGATGCTAGCACATACAGTGCTGACATGCAGAAATTCAGAAAGCTGGCATTCGATAGCAGCTGTGATAGCAGTGAGCTTGGGGGAACCAGTGATTATGGGCATAACCAGTCAGCCTCAAGCAGTGATAGATCTACAGAAATTGGCAGGGGGACAGGAAGCCGGATGCATAACCTTTG	1898	0.4473	MADNSPDNIYSSPNSNSPPSPNNDYDNADDSPPSPPSSNKSSPPSPPPPPLGNDNEESPPPPNQGSDDKNGKNSPASSNDGDGRKSTPSMSSTNSSEKDHAPKPHKLSPSERNSTPSPSSSDSSPSGGGSENALSVNAIIGIAVGAGVLILLIILLVYCCSRKKKKSKNVHYYPTHPGQDDEFYKHAKPPNHQQWNNGSDHVMSMPPAPGGAQKNWGTPPHLHQMPSSDMSNASYSGPHGPVLPPPHPSVALGFNKSTFSFEELSAATGGYASSSLLGQGGFGYVHKGVLPNGKEIAVKSLKSTGGQGDREFQAEVEIISRVHHRHLVSLVGYAISESQKLLVYEFVPNKTLEYHLHGKGRPVMDWGTRLKIAIGSAKGLAYLHEDCHPRIIHRDIKAANILIEDNFEAKVADFGLAKFNADMDTHVSTRVMGTFGYLAPEYASSGKLSEKSDVFSYGIMLLELITGRRPIDTTGEYEDDSLVDWARPLCINAMETGNFEGLVDPRLEKNYDRNEMARMIACASASVRHSARKRPKMSQIVRALEGDVSLDDLSEGGVKPGQSTVFGTGPSGEYDASTYSADMQKFRKLAFDSSCDSSELGGTSDYGHNQSASSSDRSTEIGRGTGSRMHNL	632

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Bva14g00275	632	Gene3D	Transferase(Phosphotransferase) domain 1	347	553	-	-
Bva14g00275	632	MobiDBLite	consensus disorder prediction	36	57	-	-
Bva14g00275	632	ProSitePatterns	Protein kinases ATP-binding region signature.	277	299	IPR017441	GO:0005524
Bva14g00275	632	MobiDBLite	consensus disorder prediction	58	97	-	-
Bva14g00275	632	SUPERFAMILY	Protein kinase-like (PK-like)	250	544	IPR011009	-
Bva14g00275	632	MobiDBLite	consensus disorder prediction	1	130	-	-
Bva14g00275	632	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4	7	596	-	-
Bva14g00275	632	Pfam	Protein tyrosine and serine/threonine kinase	275	544	IPR001245	GO:0004672\|GO:0006468
Bva14g00275	632	MobiDBLite	consensus disorder prediction	1	35	-	-
Bva14g00275	632	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK5	7	596	-	-

Showing 1 to 10 of 17 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva14g00275	Bva-Chr14	1420877	1424320	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva14g00275	104	623	Trihelix Transcription Factor Family	AT1G70460	49.527	3.86e-156	464

Showing 1 to 1 of 1 entries

Previous1Next

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-1	Bva14g00275		PK_Tyr_Ser-Thr	9.2e-44	CL0016

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva14g00275	-		-	gmx:100806299	699.123

Showing 1 to 1 of 1 entries

Previous1Next

Event-related genes

Show entries

Search:

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva14g00275	14	1420877	1424320	Bva14g00275	14	1420877	1424320	ECH
	Bva13g00206	13	999019	1002471	Bva14g00275	14	1420877	1424320	ECH

Showing 1 to 2 of 2 entries

Previous1Next