Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva14g00231 ATGGAGCCAGCAGTTGATATATTGCCAACCAAGCGCGTCAATCCAAgcgGATTAAATCCCGAGGGACACAAAAGACTAAAATTGTCAAGTGATGGCTTGTCATACTCTGCACGTGAGTATGATAAATTTGAGCTGAAGGAACCTAAGAATTCAAATGTTGTAGATTACTCTGACCCGTTCGCTATTCCTCACTTGATGAACCGTTTAAACGGTGGAAGATTTGGAAGTGTCACAAAGGAAATGCAGGACATTGTGGCCCGAAGAATGCAAGCACTGAGCCCATACTTTGCAAAATATCCAAGGCTCTTAAATGTTTTGTTAGAAGCAGGAGTTAATCAAAAGGAACAACCTGATAATGCAGAAAATCAACATGCTTCTGGTTTGGCACATCTAAACGTCATAAATTTGGAGGAAGATCGTGTCGCAAATGATATTCCAGCAGCGTCATTGCCTATTGTAATTATTGATTCAGATGAGGAAGACGATGGAAATCAGAAACAGGCGCTTCCATTTCAAGAAGTTACGTTGACAAAGACTGTTGAACAGTTTTCCATGATGGCCATACCTGAGTACTATCCTCCCATTGCATATCATGCAGAAAGTGAAGCCCGGAAACATAAAAGAAGTCTGCCTGCCGAAGACAATGCTAGCCGAGACCGAGATAGAGGTGTTTATGTTGGTgtgaaagaggaagagaatcATGCCATAGATGACGGCCTAGAAGATATTTGGAGGGAGATGTCAATGTCTTTAGAATGTTCCAAAGATGTTGCTGTCGATCCTCAgcctgaagaagaagaagaagaagataaaagagGAGGGGAGGACAAAGCTGGGGGGGACTGTGATCATTCCTTTGTTTTAAAAGACGATCTTGGATATGTTTGTCGAGTTTGTGGGATCATTGGCAAAGGAATTGACACCATATTTGAGTTCCAGTATGCTAAGGTAAAGAGGAATACAAGAACTTACATGGCTGATTCTTGgaatacaaaagaaagaggaaagtCTGAGGTACCTGGATTTAAACTCACTGAAGACGATCTGGTGGTAACTGGAATTTCTGCCCACCCCAGGCATATGAAGCAAATGAAACCACATCAAGTAGAAGGATTCAACTTTCTTGTCAGAAACCTTGTGGATGACAATCCTGGGGGCTGCATTTTGGCACATGCTCCAGGATCTGGGAAGACATTCATGATAATCAGTTTCATGCAAAGTTTCCTAGCAAAATATCCTAATGCTAGACCACTTGTGGTGCTTCCTAAAGGGATACTGGCAATTTGGAAAAAGGAGTTTCAAATATGGCAAGTGGAGGACATACCTCTCTATGATTTTTATACTGTGAAGGCAGATGGTCGTTCTCAGCAACTAGAGGTGTTGAAACAATGGGTGGAGCAGAAGAGTATCCTTTTCCTTGGGTACAAACAgttttcttcaattatatGTGATTGTGGAACTAACACCACATCAGTGACTTGCCAAGAGATATTACTTAAGGCTCCTTCGATTCTCATTTTGGACGAGGGGCACACTCCAAGGAATGAGAATACTGATGTCTTGCAATCACTTGCGAAAGTACAGACTCCTAGAAAGGTAGTATTGTCAGGAACTCTTTATCAAAACCATGTGAAGGAGGTGTTTAATATCTTGAATCTTGTGCGTCCAAAGTTCTTGAGGTTAGAAAATTCTCGAGGTATTGTCAAGCGAATTATGAGTAGAGTAAATATACCAGCAGtaagaaaacaatttaaagCAATTGGAGACGCAGTGTTTTATGACGTGGTTGAGCACACTTTGCAGAAGGACCTActttttaaaaggaaagttgCGGTCATACAAGATTTGCGTGAGATGACCAGTAATGTACTTCACTACTATAAAGGAGATTTCCTTGATGAGCTTCCCGGTCTAGTTGATTTCACTGTGGTACTCACTCTTACGTCTAGACAGAAGCATGAAGCTGACAAATTAAAGAGGCTATCAAGAAAGTTTAAGATAAGTTCTGTAGGGAGTGCTATTTATCTTCACCCTAAACTAAAATCCATCTCAGAAAATCTTTCTGAAAATTCTACTGTAACTGATTATATGATGGATGAAATACTAGAAAAGCTAGATGTGAAAGATGGAGTGAAGACAAAGTTTTTTCTCAATATGGTGAACTTATGCGAGTCAAGTGGGGAGAAGCTTCTGGTTTTTAGCCAATATATCCCACCTCTGAAATTCTTAGAAAGATTAGCCGCAAAAAAGAAGGGCTGGTCTCTTGGAAGAGAAATGTTTGTCATCACAGGAGAATCAAAATCTGAACAAAGGGAGGAATCAATGGAACGATTTAACAATTCACCAGAGGCCAGAGTCTTCTTTGGCTCCATCAAGGCATGTGGAGAGGGCATATCTTTGGTGGGGGCATCTCGCATAATAATTTTGGATGTCCACCTTAATCCCTCAGTTACACGCCAAGCAATTGGCCGTGCATTCCGACCAGGTCAAAAGAAGAAGGTCTTTGCATATCGACTAGTAGCTGCTGATTCACCAGAAGAGGAAGATCACCATACTTGTTTCAGGAAGGAATTAATTTCTAGGATGTGGTTTGAATGGAATGAGTATTGTGGTTATCGTGATTTTGATGTTGAGACAGTTGATGTAAAAGAATGTGGTGATCTCTTTCTGGAAAGTCCATTCTTAAGGGAAGATGTAAAAGTTCTGTATAAAAGGTA 2717 0.3912 MEPAVDILPTKRVNPSGLNPEGHKRLKLSSDGLSYSAREYDKFELKEPKNSNVVDYSDPFAIPHLMNRLNGGRFGSVTKEMQDIVARRMQALSPYFAKYPRLLNVLLEAGVNQKEQPDNAENQHASGLAHLNVINLEEDRVANDIPAASLPIVIIDSDEEDDGNQKQALPFQEVTLTKTVEQFSMMAIPEYYPPIAYHAESEARKHKRSLPAEDNASRDRDRGVYVGVKEEENHAIDDGLEDIWREMSMSLECSKDVAVDPQPEEEEEEDKRGGEDKAGGDCDHSFVLKDDLGYVCRVCGIIGKGIDTIFEFQYAKVKRNTRTYMADSWNTKERGKSEVPGFKLTEDDLVVTGISAHPRHMKQMKPHQVEGFNFLVRNLVDDNPGGCILAHAPGSGKTFMIISFMQSFLAKYPNARPLVVLPKGILAIWKKEFQIWQVEDIPLYDFYTVKADGRSQQLEVLKQWVEQKSILFLGYKQFSSIICDCGTNTTSVTCQEILLKAPSILILDEGHTPRNENTDVLQSLAKVQTPRKVVLSGTLYQNHVKEVFNILNLVRPKFLRLENSRGIVKRIMSRVNIPAVRKQFKAIGDAVFYDVVEHTLQKDLLFKRKVAVIQDLREMTSNVLHYYKGDFLDELPGLVDFTVVLTLTSRQKHEADKLKRLSRKFKISSVGSAIYLHPKLKSISENLSENSTVTDYMMDEILEKLDVKDGVKTKFFLNMVNLCESSGEKLLVFSQYIPPLKFLERLAAKKKGWSLGREMFVITGESKSEQREESMERFNNSPEARVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQKKKVFAYRLVAADSPEEEDHHTCFRKELISRMWFEWNEYCGYRDFDVETVDVKECGDLFLESPFLREDVKVLYKR 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva14g00231 905 SMART ultradead3 360 564 IPR014001 -
Bva14g00231 905 MobiDBLite consensus disorder prediction 1 25 - -
Bva14g00231 905 CDD SF2_C_SNF 703 840 - -
Bva14g00231 905 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 715 878 IPR001650 -
Bva14g00231 905 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 502 867 IPR027417 -
Bva14g00231 905 MobiDBLite consensus disorder prediction 254 280 - -
Bva14g00231 905 Gene3D - 336 584 IPR038718 -
Bva14g00231 905 Pfam Helicase conserved C-terminal domain 721 828 IPR001650 -
Bva14g00231 905 Pfam SNF2-related domain 383 561 IPR000330 GO:0005524|GO:0140658
Bva14g00231 905 Gene3D - 636 888 IPR027417 -
Bva14g00231 905 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 378 557 IPR014001 -
Bva14g00231 905 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 13 905 IPR044567 GO:0080188
Bva14g00231 905 SMART helicmild6 741 829 IPR001650 -
Bva14g00231 905 PANTHER PROTEIN CHROMATIN REMODELING 35 13 905 - -
Bva14g00231 905 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 559 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva14g00231 Bva-Chr14 1205794 1211007 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva14g00231 726 857 RAD5 or RAD16-like Gene Family AT5G43530 34.848 1.15e-15 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bva14g00231 SNF2_N 7.1e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva14g00231 K10875 - jre:108980838 1250.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva14g00231 14 1205794 1211007 Bva14g00231 14 1205794 1211007 ECH