Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva14g00229 ATgggaaagaagaataaattgaaGGAAAGTGGCAGCAAACGAGCTACAAAAGTACACTGCTCCTCAACTgtttttgtctcaaacttgCCCTACTCCTTCTCCAACTCTCAGCTCGAGGAGACGTTCAGTGATGTTGGACCAATCAGGCGTTGCTTCATGGTCACACAGAAGGGGTCAGCCCAGCATCGTGGTTTTGGTTATGCTCAATTTGCTGTTGAGGAAGATGCTAACCGTGCTATCGAGTTGAAGAATGGTTCATCTGTTGGAGGTCGGAAAATTGTAGTGAAGCATGCTACACCCCGTCCTCCCCGTGAAGTGCGACAATCAAAGTCAAATCAAGTGGTCAAGACAGATGATGTTACACAGCCAAAAGATGATAATAATGATGGTGGCTTTTCTGAAGCAGAGAAGCCTTCTTCagttttgaaggaaaaagAAATTCCGGtttcaaataatgaaaaaatttcaaggaagtccatggaaatgaaaaaaggCTCTCTTTGTGGTGATATACCAGATGAGGGGGGTTGCTCTGAAAAGCAGAGgGTTGCTAGAACTGTTATATTTGGTGGTCTTATTAATTCTAATATCGCTGAAAAAGCTCATTGCCGAGCCAGGGAAACTGGCACTGTGTGTTCTATAAAGTACCCTCTTCCAAGGGAAGAGCTTCAACATGGTCTTATACAAGATGGCTGTAAAATGGATGCATCTGCTGTACTTTACACAAGTGTGAAAGCAGCACGAACTTCTGTTGCCATGTTACATGGAAAGGAGATGGGAGGGGGAACTGTTTGGGCACGTCAACTAGGTGGAGAGGGCTCCAAGACTCAGAAATGGAAACTTATTGTCAGAAATCTTCCTTTCAAGGCCacagaaaatgatataaaagataaattttcatCTGCAGGGTTTGTTTGGGATGTATTTATTCCACACAAGTCGGATACAGGtCTCTCTAAGGGTTTCGGATTTGTGAAGTTCACATGCAAGCAAGATGCTGAAAATGCAATTCAGAAACTCAATGGATCATTGTTTCATAAACGGCTTATAGCTGTTGACTGGGCTGTTCCCAAGAAGATATATAGTAGTGATACAAATGTTCTCACTTCAGAAAATGGACAACGAAAGGAGGGAGATGTCTACGGTAGTAGCAGCGAGGATGATTTAGAGGAGGATGTTGATCATACTGGTAAACAATCTAATCATGGAGATGATAGTGATCTAGATGACTTCAATACTGCAGAGGGAGATTTTCCTTCTGATGATAATTTTGATAAGGAAGCAGACATTGCAAGAAAGGTTCTTGAGAACTTGATCACATCCTCTAACAAGGGAATATCATCAAATGATGAATCTGTGTCGtccaagaaaagcaaagagGCCAATGAAATTGTTAATGATGTAGATAATAAATCATCTAATGAGTCTGAAAAAGTTTCAGCTGTTTCAAAGCCTGAGAGTTCTGATGGAAACAAGGAATCAAATCCTAAGGAAACAGATGAAGGAGAATTGCAGAGAACAATTTTCATAAGTAATCTTCCCTTTGACTGCAACAATGAAGAAGTGAAACAACGATTTTCTGGATTTGGGGAAGTAGAATACTTTGTTCCAGTCCTTCATCAAGTGACTAAGCGACCAAAAGGGACTGGTTTTCTTAGGTTTAAAACTGTAGATGCTGCTACTGCTGCGGTTTCAGCTGCCAGTGCTGCTTCTGGCTTGGGTGTTTTTTTGAAGGGCAGGccattaaaagttttgaaggCTTTGGATAAGAAATCAGCCCATGACAAGGAACTTGAAAAGGTCAAAAATGAAGTTCATGACCACCGCAATCTTTATCTTGCAAAGGAGGGACTCATTCTTGAGGGAACTCCAGCTGCTGAAGGGGTTTCAGCAGCTGATATGTTGAAACGCCAGGAgttggaaaggaaaaagaagataaagctTCAATCACCCAATTTTCATGTTTCAAGAACCAGACTTGTTATCTACAATTTACCGAAGTCCATGACTGAGAAAGAACTCAAGAAACTTTGCATTGATGCAGTTACCTCTAGAGCAACCAAGCAAAAACCTTCAATTCAACAGATAAAGTTCTTGAGGGAtgtgaagaaaggaaaggtTGTGACTGCACACCATTCACGTGGAGTTGCCTTTGTCGAATTCTCAGAGCATCAGCATGCTCTTGTGGCGCTTAGAGTTCTCAATAATAATCCCGAAACTTTTGGTCCTGAACATCGACCAATCGTGGAGTTCGCTGTTGACAACGTTCAAACACTAAAGCTTCGGAAAGCTAAGCTTCACAAGCAAGCTACCCATGATGACAAGAATGTCAAGGAAAATAGAGAAACCAACAAATCAGATGCCCATTCACACAAGAAGGACAGAAAACGGAAATCTCGAGATCTTGAGAATTCAGGGAAGGACTCTGTCACCAACGCAGAAGATGAAGTAGGAAGAAGCGTACCAAATGGAAAAGGACACAAATCCAAAAGACATAAAGGCGACCATACAAGTGGAAAGGCTGAAGGATTACCACATAAAGATAATTCAGAAGGCTTGCCCAGGAAGCCAAAGAATAATGACCAAGATGGAAAGAATCATGGTGGTAAGACAGTAGTTCAAGGCCAAACCAATGCCATTAACGCCAATAAAACACAATACGGTAAAAAAGCAGATATTGGATTGAAAAAGAGGAAGATGCAGAACCAAACAGAGCAAGACGGggaaaaattttctaagaaacGCTCTAAGAAGAATAAGGAGCCTGTGGGCAAAGATGTAGTTGATAAGCTTGACATGCTTATACAACAATATAGATCCAAGTTCTCCCAGCAAAATTCGCATGGAAATGATAGTGAGAAAAAACCTTCCAAACAGATCAGAAAATGGTTTGAATCATA 2900 0.3855 MGKKNKLKESGSKRATKVHCSSTVFVSNLPYSFSNSQLEETFSDVGPIRRCFMVTQKGSAQHRGFGYAQFAVEEDANRAIELKNGSSVGGRKIVVKHATPRPPREVRQSKSNQVVKTDDVTQPKDDNNDGGFSEAEKPSSVLKEKEIPVSNNEKISRKSMEMKKGSLCGDIPDEGGCSEKQRVARTVIFGGLINSNIAEKAHCRARETGTVCSIKYPLPREELQHGLIQDGCKMDASAVLYTSVKAARTSVAMLHGKEMGGGTVWARQLGGEGSKTQKWKLIVRNLPFKATENDIKDKFSSAGFVWDVFIPHKSDTGLSKGFGFVKFTCKQDAENAIQKLNGSLFHKRLIAVDWAVPKKIYSSDTNVLTSENGQRKEGDVYGSSSEDDLEEDVDHTGKQSNHGDDSDLDDFNTAEGDFPSDDNFDKEADIARKVLENLITSSNKGISSNDESVSSKKSKEANEIVNDVDNKSSNESEKVSAVSKPESSDGNKESNPKETDEGELQRTIFISNLPFDCNNEEVKQRFSGFGEVEYFVPVLHQVTKRPKGTGFLRFKTVDAATAAVSAASAASGLGVFLKGRPLKVLKALDKKSAHDKELEKVKNEVHDHRNLYLAKEGLILEGTPAAEGVSAADMLKRQELERKKKIKLQSPNFHVSRTRLVIYNLPKSMTEKELKKLCIDAVTSRATKQKPSIQQIKFLRDVKKGKVVTAHHSRGVAFVEFSEHQHALVALRVLNNNPETFGPEHRPIVEFAVDNVQTLKLRKAKLHKQATHDDKNVKENRETNKSDAHSHKKDRKRKSRDLENSGKDSVTNAEDEVGRSVPNGKGHKSKRHKGDHTSGKAEGLPHKDNSEGLPRKPKNNDQDGKNHGGKTVVQGQTNAINANKTQYGKKADIGLKKRKMQNQTEQDGEKFSKKRSKKNKEPVGKDVVDKLDMLIQQYRSKFSQQNSHGNDSEKKPSKQIRKWFES 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva14g00229 966 PANTHER RNA BINDING PROTEIN 497 769 - -
Bva14g00229 966 MobiDBLite consensus disorder prediction 835 865 - -
Bva14g00229 966 MobiDBLite consensus disorder prediction 443 504 - -
Bva14g00229 966 SUPERFAMILY RNA-binding domain, RBD 22 265 IPR035979 GO:0003676
Bva14g00229 966 MobiDBLite consensus disorder prediction 490 504 - -
Bva14g00229 966 Gene3D - 2 114 IPR012677 -
Bva14g00229 966 Gene3D - 439 603 IPR012677 -
Bva14g00229 966 SUPERFAMILY RNA-binding domain, RBD 497 592 IPR035979 GO:0003676
Bva14g00229 966 MobiDBLite consensus disorder prediction 797 814 - -
Bva14g00229 966 Coils Coil 584 611 - -
Bva14g00229 966 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 658 766 IPR000504 GO:0003723
Bva14g00229 966 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 24 93 IPR000504 GO:0003723
Bva14g00229 966 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 508 566 IPR000504 GO:0003723
Bva14g00229 966 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 281 350 IPR000504 GO:0003723
Bva14g00229 966 MobiDBLite consensus disorder prediction 371 424 - -
Bva14g00229 966 CDD RRM1_RBM28_like 23 101 - -
Bva14g00229 966 MobiDBLite consensus disorder prediction 767 789 - -
Bva14g00229 966 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 279 357 IPR000504 GO:0003723
Bva14g00229 966 SUPERFAMILY RNA-binding domain, RBD 275 379 IPR035979 GO:0003676
Bva14g00229 966 SMART rrm1_1 507 585 IPR000504 GO:0003723
Bva14g00229 966 SMART rrm1_1 280 353 IPR000504 GO:0003723
Bva14g00229 966 SMART rrm1_1 659 750 IPR000504 GO:0003723
Bva14g00229 966 SMART rrm1_1 23 96 IPR000504 GO:0003723
Bva14g00229 966 MobiDBLite consensus disorder prediction 475 489 - -
Bva14g00229 966 MobiDBLite consensus disorder prediction 951 966 - -
Bva14g00229 966 CDD RRM4_RBM28_like 658 755 - -
Bva14g00229 966 Gene3D - 266 401 IPR012677 -
Bva14g00229 966 MobiDBLite consensus disorder prediction 453 474 - -
Bva14g00229 966 MobiDBLite consensus disorder prediction 119 152 - -
Bva14g00229 966 CDD RRM2_RBM28_like 280 356 - -
Bva14g00229 966 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 22 100 IPR000504 GO:0003723
Bva14g00229 966 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 14 467 - -
Bva14g00229 966 MobiDBLite consensus disorder prediction 96 152 - -
Bva14g00229 966 CDD RRM3_RBM28_like 506 587 - -
Bva14g00229 966 MobiDBLite consensus disorder prediction 391 409 - -
Bva14g00229 966 MobiDBLite consensus disorder prediction 764 966 - -
Bva14g00229 966 MobiDBLite consensus disorder prediction 890 928 - -
Bva14g00229 966 PANTHER RNA BINDING PROTEIN 14 467 - -
Bva14g00229 966 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 497 769 - -
Bva14g00229 966 MobiDBLite consensus disorder prediction 866 885 - -
Bva14g00229 966 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 506 589 IPR000504 GO:0003723
Bva14g00229 966 Gene3D - 657 752 IPR012677 -
Bva14g00229 966 SUPERFAMILY RNA-binding domain, RBD 651 756 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva14g00229 Bva-Chr14 1192034 1192729 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva14g00229 283 358 Eukaryotic Initiation Factors Gene Family AT3G11400 39.474 4.10e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva14g00229 K14573 - gmx:100794821 1274.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva14g00229 14 1192034 1192729 Bva14g00229 14 1192034 1192729 ECH