Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva14g00132 ATGCACAAGTCACAACCCCTCTCCTGTGTCTCTCTCAATCATTTTCTGCTCCTTTTCACTCCTTGGGGCATATCATGGTCACGCTCTTGCTCTGTACCCTTCTCTCCTTCTCAGAAAGCATTCCCAGTGGGGTGGCGCAAAAAAGTAGCTGAAATAGTAGAAAAGACTGtgccttttctcttcttcactTCGCTAGTTTGCGATCGTTTTAGAGAGCTGATGGGTGATGCAATGAAGCAGTCTTTTGACAGTACATCTTCAGGTCCTACCGAGATTCCATCTGTAAATATATCTAAGGAAGTGGGACGTGTTTCATGGGAGATTTTATCTGGTTCAGATGCATACCATGCGTCATCTGATGCTACCCTGTTTTCGAGCTCATTACCTGTTTTGCCACATGAAAAGTTGAACTTGAATGACACTGAAAATGGTTTTCAAGCTGTTGATGACATCTCATCTGGCTTTCAAAAGATCCATCAAGATATTGAGGGCAATGATTCACTTGAAGGTCTTGATACCCATGCAATTGGACCCTCGCTTCCTGATGATGAGGAGGAGCTTTTAGCTGGCATAATGGATGATTTTGACCTAAGCGGCTTGCCTGGTTCCCTGGAGGACTTGGAAGAGTATGATCTTTTTGGTAGCGGTGGAGGTATGGAGCTGGAAACTGACCCACAGGAAAGTCTCAGTGTGGGTATGTCAAAATTAAGTTTCTCTGATGGTTCTATTGGCAATGGTGTGGCCCATTATTCTTTTCCTAATGGTGTGGGAACTGTTGCTGGAGAACATCCATATGGGGAACATCCTTCTCGAACATTATTTGTTCGAAATATTAACAGTAATGTGGAGGATTCTGATCTGAGAGCCCTTTTTGAGcaaTATGGTGATATTCGAACCCTCTATACGGCATGTAAACATCGTGGATTTGTAATGATTTCCTACTATGATATCCGTGCTGCTCGAACAGCTATGCGTGCATTACAAAACAAACCACTGCGACGCAGGAAACTTGACATTCATTTCTCAATACCAAAGGATAATCCATCAGACAAGGATATCAACCAAGGAACCTTGGTGGTGTTTAATTTGGATCCATCTGTTTCAAATGAAGACCTTCGTCAAATATTTATGGCTTATGGTGAGGTCAAAGAGaTAAGGGAAACACCGCACAAGAGGCATCATAAGTTTATCGAATATTATGACGTTAGAGCTGCAGAAGCAGCACTTAAGTCATTGAACAGGAGTGACATAGCTGGTAAACGCATAAAGCTAGAACCAAGTCGCCCTGGTGGAGCTCGTCGAAATTTAATGCTGCAAATAAACCAAGAGCTTGAGCCAGATGAATCTCGAAGTTTCCGGCTGCAAGTGGGTTCACCACTTACAAACTCCCCACCAGGTAACTGGCTGCATGTCAACAGTCCTGTTGAACATAATCTAATGCAAACTATGAGTAAATCCCCTGGATCTAGAATCATGAGCCCTACAACAGGAAACCATTCACCTGGGTTAGCTTCAATTTTGCAACCTCAGGTATCAAATACTATCAAGGGTGCAACCATTGGCAAGGACTTAGGAAAGAGTATTTATGGAGAGCACTTATATGCTACAAACAGTTCATCACATGGGGCTGCATTTCAGTCACATTCATTGCCGGAGCCAGATTTCACCCAATATCAGGGTGCATTACCCTCTTTTGGTCCATCGACTTCCAATGGATCCTCTATGGAGACCTTGTCTGGCCCACAATTTCTATGGGGAAGTTCAAGCCTATACTCAGAGCACACCAAAGCTTCAGCTTGGGCAAGGCCATCTGTTGGGCATCCATTTACATCAAATGGCAAGACCCATGCCTTCCCATATGCAGAGTCACCAGATGCCTCTTTCATGAATCGTGTTGCTTTTGGAGGCATGAGTTTAGGACACAATGGGATAAATATGTTAGAAAATGGCTCTTCAAACGTCAGAATGAGATCTTCTCCAAGGGTTAGCCCAGTCTTTTTGGGCAATGGTCCTTACCCAGGACTGCCACATACAACATTTGAGGGTTTGACTGACCGTGGGAGGATCAGACGGACAGAGAACAATGGGAGCCAAGTTGACAGCAAGAAACAATTTCAGCTTGACTTGGATAAGATTATAAGTGGTGAAGATAAAAGGACTACTTTAATGATAAAGAACATCCCAAATAAATACACTTCAAAAATGTTACTAGCTGCCATTGATGAATATCACAGGGGTACCTATGATTTTCTCTACCTGCCAATTGATTTTAAGAATAAATGCAACGTGGGCTATGCATTTATCAACATGCTCTCACCATCACTCATTATTCCATTCTATGAGTCATTTAATGGGAAGAAGTGGGAGAAGTTTAATAGTGAGAAAGTTGCTTCGTTGGCATATGCCCGAATTCAAGGAAAGACTGCCCTTGTTAGCCACTTCCAAAATTCGAGTTTGATGAATGAAGATAAGCGCTGCCGCCCTATTCTTTTCCACTCAGAGGGTTCTGAAGGTGGTGATCAGATCATACAAGAGCATCTTGCCTCCAACAATTTGAATCTTCATATCCTTAGGCCAAGTGAGTCACATTCAAGTGATTTTCCGGGAAGCCCTCCGAAGGATGGCCCTCCTGAGAACTTGGAGATAAGTTA 2651 0.4281 MHKSQPLSCVSLNHFLLLFTPWGISWSRSCSVPFSPSQKAFPVGWRKKVAEIVEKTVPFLFFTSLVCDRFRELMGDAMKQSFDSTSSGPTEIPSVNISKEVGRVSWEILSGSDAYHASSDATLFSSSLPVLPHEKLNLNDTENGFQAVDDISSGFQKIHQDIEGNDSLEGLDTHAIGPSLPDDEEELLAGIMDDFDLSGLPGSLEDLEEYDLFGSGGGMELETDPQESLSVGMSKLSFSDGSIGNGVAHYSFPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSDLRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFMAYGEVKEIRETPHKRHHKFIEYYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQINQELEPDESRSFRLQVGSPLTNSPPGNWLHVNSPVEHNLMQTMSKSPGSRIMSPTTGNHSPGLASILQPQVSNTIKGATIGKDLGKSIYGEHLYATNSSSHGAAFQSHSLPEPDFTQYQGALPSFGPSTSNGSSMETLSGPQFLWGSSSLYSEHTKASAWARPSVGHPFTSNGKTHAFPYAESPDASFMNRVAFGGMSLGHNGINMLENGSSNVRMRSSPRVSPVFLGNGPYPGLPHTTFEGLTDRGRIRRTENNGSQVDSKKQFQLDLDKIISGEDKRTTLMIKNIPNKYTSKMLLAAIDEYHRGTYDFLYLPIDFKNKCNVGYAFINMLSPSLIIPFYESFNGKKWEKFNSEKVASLAYARIQGKTALVSHFQNSSLMNEDKRCRPILFHSEGSEGGDQIIQEHLASNNLNLHILRPSESHSSDFPGSPPKDGPPENLEIS 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva14g00132 883 CDD RRM1_MEI2_like 270 346 IPR034453 -
Bva14g00132 883 SUPERFAMILY RNA-binding domain, RBD 268 431 IPR035979 GO:0003676
Bva14g00132 883 CDD RRM3_MEI2_like 722 807 IPR034454 -
Bva14g00132 883 SUPERFAMILY RNA-binding domain, RBD 721 805 IPR035979 GO:0003676
Bva14g00132 883 SMART rrm1_1 272 340 IPR000504 GO:0003723
Bva14g00132 883 SMART rrm1_1 721 797 IPR000504 GO:0003723
Bva14g00132 883 SMART rrm1_1 357 425 IPR000504 GO:0003723
Bva14g00132 883 Pfam RNA recognition motif 2 719 815 IPR007201 -
Bva14g00132 883 Gene3D - 260 355 IPR012677 -
Bva14g00132 883 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 273 337 IPR000504 GO:0003723
Bva14g00132 883 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 358 423 IPR000504 GO:0003723
Bva14g00132 883 PANTHER PROTEIN MEI2-LIKE 2 621 877 - -
Bva14g00132 883 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 356 429 IPR000504 GO:0003723
Bva14g00132 883 CDD RRM2_MEI2_like 355 425 - -
Bva14g00132 883 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 271 344 IPR000504 GO:0003723
Bva14g00132 883 PANTHER RNA RECOGNITION MOTIF-CONTAINING 79 622 - -
Bva14g00132 883 MobiDBLite consensus disorder prediction 561 577 - -
Bva14g00132 883 Gene3D - 356 453 IPR012677 -
Bva14g00132 883 PANTHER RNA RECOGNITION MOTIF-CONTAINING 621 877 - -
Bva14g00132 883 MobiDBLite consensus disorder prediction 542 577 - -
Bva14g00132 883 MobiDBLite consensus disorder prediction 860 883 - -
Bva14g00132 883 PANTHER PROTEIN MEI2-LIKE 2 79 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva14g00132 Bva-Chr14 667772 673484 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva14g00132 266 464 Eukaryotic Initiation Factors Gene Family AT1G71770 25.333 1.47e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva14g00132 - - gmx:100800877 1321.22