Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva14g00098 ATGGCGTTTCCCAACCAATCCTTGTCAGTTTCTCCTCAGAGAAAGATTGGAAGAGGGAAGATTGAGATCAAGAGGATTGAGAACACCACCAATCGCCAAGTCACCTTCTGTAAGCGCAGGAATGGTCTTCTCAAGAAGGCATATGAATTATCTGTGCTTTGTGATGCTGAGATTGCTTTAATCGTCTTCTCTAGCCGTGGACGCCTCTATGAATATGCTAATAACAGTGTCAAAGCAACTATTGAGAGATACAAGAAGGCATGTTCAGATTCTACTAATGGTGGATCAGCTTCTGAGGCAGATGCCAAGTACTACCAGCAAGAAGCTGCCAAACTGCGAATGCAAATTAGCAACCTTCAGAATAACAACAGGCAAATGATGGGTGAGGCTTTGGGCAATCTGTCTGTCAAGGACCTTAAAAACCTGGAGACTAGGCTAGAAAAAGGAATTAGCAGAATTCGTTCCaaaaagAATGAGCTGCTATTTGCAGAAATTGAGTACATGCAGAAAAGGGAAATTGACTTGCACAATAATAACCAGCTTCTTCGAGCAAAGCAGATAGCCGAAAGTGAGAGAAGCCAACATAACATGAACTTGATGCCAGGAAGCTCAAGCTATGAAGCTATGCAGTCTCATCAGAACCCATATGACTCTCGAACCTACTTTCAAGTGACTGGGTTACAACCCAGTAATCAGTATTCGAAACAAGATCAGATGGCCCTTCAATTAGTTTA 734 0.4237 MAFPNQSLSVSPQRKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIVFSSRGRLYEYANNSVKATIERYKKACSDSTNGGSASEADAKYYQQEAAKLRMQISNLQNNNRQMMGEALGNLSVKDLKNLETRLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAESERSQHNMNLMPGSSSYEAMQSHQNPYDSRTYFQVTGLQPSNQYSKQDQMALQLV 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva14g00098 243 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Bva14g00098 243 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Bva14g00098 243 Pfam K-box region 99 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva14g00098 243 CDD MADS_MEF2_like 17 91 IPR033896 GO:0000977|GO:0045944
Bva14g00098 243 PANTHER AGAMOUSB 10 236 - -
Bva14g00098 243 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Bva14g00098 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Bva14g00098 243 Gene3D - 28 94 IPR036879 GO:0003677|GO:0046983
Bva14g00098 243 Coils Coil 102 129 - -
Bva14g00098 243 ProSiteProfiles K-box domain profile. 102 192 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva14g00098 243 Coils Coil 139 159 - -
Bva14g00098 243 PANTHER MADS BOX PROTEIN 10 236 - -
Bva14g00098 243 SUPERFAMILY SRF-like 17 88 IPR036879 GO:0003677|GO:0046983
Bva14g00098 243 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Bva14g00098 243 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Bva14g00098 243 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva14g00098 Bva-Chr14 502423 509716 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva14g00098 14 243 MADS-box Gene Family AT3G58780 66.809 1.97e-109 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bva14g00098 K-box 7.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva14g00098 K09264 - gmx:732595 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g00057 13 261781 268944 Bva14g00098 14 502423 509716 BWGD
Bva14g00098 14 502423 509716 Bva14g00098 14 502423 509716 ECH