Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03571 ATGGAATCGGAGGACAACTTCGATATTGAAGATTTGAATAATGATGGGGAGTCGGTGGACAATGAAGACGATTTCTATAGCGGCGGCGATTACGACGCAGGTTTGTACAGTTACGATGACGATGGTGACGCGGCAGATTTTGAGTTCATCGACAATGATTCCGATGATTCTGACGACACTGCCTTGTATCGTCATCAGcaAAACTATACCATCTTGAgtgaaaatgacatttttcaaCGTCAAGAGGATGATGTTATGAGGATATCTACTGTGCTATCCATTCCAAAAGTTGCTGCTAGTATACTGCTTCGCTACTATAATTGGAATGTTGGGAAAGTACATGATGAATGGTTTGTAGATGAAGAAAAGGTTCGCAGGGCTGTTGGCTTATTGCAGAGACCTGTTGTGGAATATCCAAATGCTAAAGAGCTGACTTGTGGAATCTGTTTTGAAACCTATCCTTGTGATAAGATGCATGCCGCATCTTGTGCCCATCCATTTTGTACCACATGCTGGGCAGGTTATATTAGCACAGCCATCAATGATGGTCCGGGATGTTTATTGTTGCGATGTCCAGACCCATCATGTGGTGCTACTGTTGGTCAAGATATGATCGATTTATTGGCTTCTGATGAAGACAAGGAAAAGTACCGCCgttattttattagatcttATATTGAGGACAACAGAAAGACAAAATGGTGTCCTGCGCCTGGCTGCGATTATGCTGTGGACTTTGTCATTGGCAGTGGAAGCTATGATGTTGTGTGCCGCTGCTCATATGGATTTTGCTGGAACTGTACTGAAGAAGCACACAGGCCTGTTGATTGCAGCACTGTGGCCAAATGGATATTGAAGAATAGTGCTGAATCTGAAAATATGAATTGGATACTGGCCAATTCAAAACCTTGTCCAAAGTGCGAGCGACCTATTGAGAAAAACCAAGGTTGTATGCATATAACATGCACACCGCCTTGTAAGTTTGAGTTTTGCTGGCTTTGCCTTGGTGCGTGGTCTGAGCATGGTGAGAGAACAGGTGGTTTTTATGCATGTAATCGTTATGAAACAGCAAAACAAGAGGGAGTGTATGACGAGGCTGAAAAACGGAGAGAGATGGCCAAGAACTCTCTTGAGAGATATACTCACTATTATGAAAGATGGGCGACCAATCAATCATCCAGGCAAAAAGCTCTTGCAGACTTACAGCAAATGCAATCTGTGCATCTCGAGAAGCTCAGTGACATACATTGTCAGCCTGAGTCGCagctaaaatttataacagaGGCCTGGCTACAGATTGTTGAATGCAGGCGTGTTTTAAAATGGACATATGCCTACGGATTTTATTTACCTGAGCATGAGCATGCCAAGAGACAATTTTTTGAGTACTTGCAAGGTGAAGCTGAATCTGGATTGGAACGACTTCATCAGTGTGCCGAGAAGGAATTGCAAGTTTACCTCAACGCAGAGGGTTCATCAAAAGATTTTAACGATTTCCGCACAAAACTTGCTGGACTCACCTGTGTAACTCGAAACTACTTTGAGAATTTAGTACGGGCTCTGGAGAATGGTTTATCAGATGTTAACTCTCATGGTGGTAGCAGCAGGACAGCAAGCTCCAAGAGCTTAGGAAGTGTGGGCAGTAAGGGTAGAGGTGGGAGGGGGAAGGGTACAACAGCCAGATCAAGTAGTACCAAAAGCATCGATGATTCTGGTCACTGGTCATGTGATCATTGCACATATGCAAACGCAAGGTCAACGACTATCTGTCAGATGTGCCACCACCACCGGAGGTA 1796 0.4304 MESEDNFDIEDLNNDGESVDNEDDFYSGGDYDAGLYSYDDDGDAADFEFIDNDSDDSDDTALYRHQQNYTILSENDIFQRQEDDVMRISTVLSIPKVAASILLRYYNWNVGKVHDEWFVDEEKVRRAVGLLQRPVVEYPNAKELTCGICFETYPCDKMHAASCAHPFCTTCWAGYISTAINDGPGCLLLRCPDPSCGATVGQDMIDLLASDEDKEKYRRYFIRSYIEDNRKTKWCPAPGCDYAVDFVIGSGSYDVVCRCSYGFCWNCTEEAHRPVDCSTVAKWILKNSAESENMNWILANSKPCPKCERPIEKNQGCMHITCTPPCKFEFCWLCLGAWSEHGERTGGFYACNRYETAKQEGVYDEAEKRREMAKNSLERYTHYYERWATNQSSRQKALADLQQMQSVHLEKLSDIHCQPESQLKFITEAWLQIVECRRVLKWTYAYGFYLPEHEHAKRQFFEYLQGEAESGLERLHQCAEKELQVYLNAEGSSKDFNDFRTKLAGLTCVTRNYFENLVRALENGLSDVNSHGGSSRTASSKSLGSVGSKGRGGRGKGTTARSSSTKSIDDSGHWSCDHCTYANARSTTICQMCHHHRR 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03571 598 MobiDBLite consensus disorder prediction 528 572 - -
Bva13g03571 598 SUPERFAMILY RING/U-box 141 227 - -
Bva13g03571 598 Coils Coil 363 383 - -
Bva13g03571 598 SUPERFAMILY RING/U-box 296 344 - -
Bva13g03571 598 SUPERFAMILY RING/U-box 215 284 - -
Bva13g03571 598 CDD RING-HC_RBR_TRIAD1_like 146 196 - -
Bva13g03571 598 SMART ibrneu5 281 351 IPR002867 -
Bva13g03571 598 SMART ibrneu5 215 277 IPR002867 -
Bva13g03571 598 Gene3D - 568 598 - -
Bva13g03571 598 Gene3D - 273 528 - -
Bva13g03571 598 SUPERFAMILY Ran binding protein zinc finger-like 570 597 IPR036443 -
Bva13g03571 598 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 38 544 - -
Bva13g03571 598 MobiDBLite consensus disorder prediction 1 28 - -
Bva13g03571 598 ProSitePatterns Zinc finger RanBP2-type signature. 574 593 IPR001876 -
Bva13g03571 598 MobiDBLite consensus disorder prediction 528 546 - -
Bva13g03571 598 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 226 IPR013083 -
Bva13g03571 598 Pfam Ariadne domain 364 525 IPR045840 -
Bva13g03571 598 ProSiteProfiles Zinc finger RING-type profile. 146 190 IPR001841 -
Bva13g03571 598 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 38 544 IPR031127 GO:0004842|GO:0016567
Bva13g03571 598 MobiDBLite consensus disorder prediction 1 27 - -
Bva13g03571 598 Pfam IBR domain, a half RING-finger domain 294 341 IPR002867 -
Bva13g03571 598 Pfam IBR domain, a half RING-finger domain 215 277 IPR002867 -
Bva13g03571 598 ProSiteProfiles TRIAD supradomain profile. 142 355 IPR044066 -
Bva13g03571 598 SMART zf_4 572 596 IPR001876 -
Bva13g03571 598 ProSiteProfiles Zinc finger RanBP2 type profile. 570 598 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03571 Bva-Chr13 24101762 24116069 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03571 19 597 ARIADNE family AT1G65430 73.575 0.0 888