Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03548 ATGCGTTTAATAGTGGAAGAGGAAGCAGATGACAACATTCTTGTTCCGCCGCCCAATTTCTCTATGGTTGAGGACGGCATTTTTCGATCCAGCTTCCCTCAACCCTCCAATTTCGGCTTCCTTCAATCCCTAAATCTTGGATCCATCATATACTTCTGTCCTGAGCCCTATCCACAAGAAaatttggactttcttcgaTCGCAAAATATTCGGCTCTTTCAATTTGGAATTGAGGGAAAGAcggtaattttcttttgtcctaTGGTTTCCCCTGTTATACGCTGTGCAGCACTGGACCTTTCTGTATCTATTCTCAAGGATACCATGATGGAGGCTCTGAAAGTTTTAATTGATGTGAGAAATCACCCAGTTTTGATCCATTGCAAACGAGGAAAGCATCGAACAGGATGCCTTGTTGGTTGCTTGAGGAAATTGCAGAATTGGTGTTTGTCTTCCGTGTTTGAGGAGTACGAGCGATTCGCTGGTGCTAAATCCAGGGCAAtggatttaaggtttatagaAAGCTTTGACGTGTTATGCCTGAGACAGTGCCTTTACAGCATCATATACCAGTACCAAGGATATGGTTCAAAGAAGAGGAGGTTGTTGTATAGGGAAGAGAATCTACAGAAGCCCCAAGTGACATCAGTTTA 653 0.4012 MRLIVEEEADDNILVPPPNFSMVEDGIFRSSFPQPSNFGFLQSLNLGSIIYFCPEPYPQENLDFLRSQNIRLFQFGIEGKTVIFFCPMVSPVIRCAALDLSVSILKDTMMEALKVLIDVRNHPVLIHCKRGKHRTGCLVGCLRKLQNWCLSSVFEEYERFAGAKSRAMDLRFIESFDVLCLRQCLYSIIYQYQGYGSKKRRLLYREENLQKPQVTSV 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03548 217 Pfam Tyrosine phosphatase family 14 178 IPR004861 -
Bva13g03548 217 PRINTS Plant and fungal dual specificity phosphatase signature 70 84 IPR020428 GO:0016791
Bva13g03548 217 PRINTS Plant and fungal dual specificity phosphatase signature 104 118 IPR020428 GO:0016791
Bva13g03548 217 PRINTS Plant and fungal dual specificity phosphatase signature 51 64 IPR020428 GO:0016791
Bva13g03548 217 PRINTS Plant and fungal dual specificity phosphatase signature 14 31 IPR020428 GO:0016791
Bva13g03548 217 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 14 177 IPR029021 -
Bva13g03548 217 Gene3D Protein tyrosine phosphatase superfamily 13 179 IPR029021 -
Bva13g03548 217 PANTHER TYROSINE-PROTEIN PHOSPHATASE DSP5 9 200 - -
Bva13g03548 217 ProSitePatterns Tyrosine specific protein phosphatases active site. 126 136 IPR016130 GO:0016311|GO:0016791
Bva13g03548 217 ProSiteProfiles Dual specificity protein phosphatase domain profile. 19 201 IPR020422 GO:0006470|GO:0008138
Bva13g03548 217 PANTHER TYROSINE-PROTEIN PHOSPHATASE 9 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03548 Bva-Chr13 23992129 23994628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03548 1 217 Protein tyrosine phosphatase (PTP) family AT3G02800 61.364 3.75e-96 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03548 K18045 - qsu:112008997 333.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g03548 13 23992129 23994628 Bva13g03548 13 23992129 23994628 ECH