Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03545 ATGGAATTCGATGCCGCAATTCCGATTTCCCGAGCGGGCGTCACCGACCCGTCCCTCACCGCCTCCCAAGATGCGATGTGGCAAATGAAATTGAGATCAGGAGAAACAATGGAGTCTGGACCTTATCCTGAGCATCCAGGAGAACCAGattgttcatattacatcagaaCAGGACTTTGTAGATTTGGGGCAACATGTCGATTTAATCATCCACCTAACAGGAGACTGGCCATTGCAGCTGCAAGGATGAAAGGTGAGTTCCCAGAAAGAATAGGACAACCAGAATGTCAGTACTATCTGAAGACAGGAACTTGCAAATTTGGGGCTACATGCAAGTTTCATCATCCTAGAGACAAGGCTGGGATCGCAGGAAGAGTTgccttaaatattttaggcTATCCACTTCGCCCTGACGAACCTGAATGTGCTTATTATTTGAGAACAGGACAATGCAAATATGGGAGCACTTGCAAATTCCACCATCCTCAACCAACTAATATGATGGTCTCATTGTGGGGTTCCTCTGTTTATCCTAGTGTCCAGTCTCCAACCACGCCCGGTCAGCAGTCATATGCAGGGGGAATTACAAATTGGTCCCGGGCATCTTATATTCCAAGTCCACGTTGGCAAGGTCCTTcaagttatgcttctctaatTCTACCTCAGGGAGTGGTTTCAGTTCCTGGATGGAGTGCTTACAGTggTCAGATGGGATCTATCTCTATTCCGGACAGTCCACAGCAAACGATGGGAAATGGTCAAATTTATGGAACTTCTCGCCAAGGTGAAGCAGCAAATAGTGGATCTCAGGGGGCATATTCTCAATTCCGTTCTGGCTCTGTTCCTGTAGGATTTTATGCATTGCAGAGGGACAACATATTTCCTGAAAGACCTGGTCAGCCTGAATGCCAATTCTACATGAAGACTGGAGACTGTAAGTTTGGTGCAGTCTGTCGGTTTCATCATCCGCCTGAGAGGATGATTCCTGCTCCTGACTGTGTATTAAGTCCCATAGGTCTTCCTTTACGTCCAGGAGAGCCTTTATGTGTCTTCTATTCACGGTATGGCATCTGTAAATTTGGACCAAGTTGCAAGTTTGACCACCCAATGGGAATATTCTCCTATAATCTATCTGCATCACCTTCAGCTGATGTACCAGTCCGGCGTTTGTTGGGGTCGTCATCCGGAACTGCtgcattaaatttatcatctgAAGGGCTTGTTGAATCAGGCTCCACAAAGCCCAGGCGGCTTTCACTTCCAGAGACAAGACAGATTCGTTCTGGTGATGATAACATTGATGATGAGGAATG 1313 0.4448 MEFDAAIPISRAGVTDPSLTASQDAMWQMKLRSGETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRRLAIAAARMKGEFPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPDEPECAYYLRTGQCKYGSTCKFHHPQPTNMMVSLWGSSVYPSVQSPTTPGQQSYAGGITNWSRASYIPSPRWQGPSSYASLILPQGVVSVPGWSAYSGQMGSISIPDSPQQTMGNGQIYGTSRQGEAANSGSQGAYSQFRSGSVPVGFYALQRDNIFPERPGQPECQFYMKTGDCKFGAVCRFHHPPERMIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFSYNLSASPSADVPVRRLLGSSSGTAALNLSSEGLVESGSTKPRRLSLPETRQIRSGDDNIDDEE 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03545 437 MobiDBLite consensus disorder prediction 406 437 - -
Bva13g03545 437 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 345 370 IPR000571 GO:0046872
Bva13g03545 437 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 299 324 IPR000571 GO:0046872
Bva13g03545 437 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 93 117 IPR000571 GO:0046872
Bva13g03545 437 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 47 72 IPR000571 GO:0046872
Bva13g03545 437 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 163 IPR000571 GO:0046872
Bva13g03545 437 SUPERFAMILY CCCH zinc finger 50 73 IPR036855 GO:0046872
Bva13g03545 437 SMART c3hfinal6 45 72 IPR000571 GO:0046872
Bva13g03545 437 SMART c3hfinal6 90 117 IPR000571 GO:0046872
Bva13g03545 437 SMART c3hfinal6 343 370 IPR000571 GO:0046872
Bva13g03545 437 SMART c3hfinal6 136 163 IPR000571 GO:0046872
Bva13g03545 437 SMART c3hfinal6 297 324 IPR000571 GO:0046872
Bva13g03545 437 SUPERFAMILY CCCH zinc finger 94 119 IPR036855 GO:0046872
Bva13g03545 437 Gene3D - 296 380 - -
Bva13g03545 437 Gene3D - 44 120 - -
Bva13g03545 437 ProSiteProfiles Zinc finger C3H1-type profile. 46 73 IPR000571 GO:0046872
Bva13g03545 437 SUPERFAMILY CCCH zinc finger 139 164 IPR036855 GO:0046872
Bva13g03545 437 ProSiteProfiles Zinc finger C3H1-type profile. 136 164 IPR000571 GO:0046872
Bva13g03545 437 PANTHER PROTEIN PHOSPHATASE RELATED 19 436 - -
Bva13g03545 437 ProSiteProfiles Zinc finger C3H1-type profile. 343 371 IPR000571 GO:0046872
Bva13g03545 437 SUPERFAMILY CCCH zinc finger 346 370 IPR036855 GO:0046872
Bva13g03545 437 ProSiteProfiles Zinc finger C3H1-type profile. 297 325 IPR000571 GO:0046872
Bva13g03545 437 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 19 436 - -
Bva13g03545 437 ProSiteProfiles Zinc finger C3H1-type profile. 90 118 IPR000571 GO:0046872
Bva13g03545 437 SUPERFAMILY CCCH zinc finger 301 325 IPR036855 GO:0046872
Bva13g03545 437 Gene3D - 121 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03545 Bva-Chr13 23978827 23984519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03545 26 436 C2H2 Transcription Factor Family AT3G02830 63.095 1.01e-178 502
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva13g03545 zf-CCCH 5.3e-09 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g03545 13 23978827 23984519 Bva13g03545 13 23978827 23984519 ECH