Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03520 ATGAATTGCTTCCCGTGTTTTTCATCTCAGAGAAGTAAGAAAAACCTTAGCAAGAGGGAGCATGGTTCTTCCCCAGAAGAGGACAGTCCACCTCCACCACCAAAACCAGCGGAAGTAAAACCAAAGGCTGATGAGCCCAAAGTCCAAGATGAGCAGCCTGCAGCACCAAATATTCAAGCACAAACTTTCACTTTCCGTGAGCTAGCAAGTGCAACTAAGAATTTCCGCCAGGAATGCCTCTTGGGTGAAGGTGGCTTTGGCAGAGTGTACAAGGGCACAATTGCTAAAACAGGGCAGGTGGTAGCCGTTAAGCAACTTGATCGAAATGGTTTGCAAGGCAATAAGGAATTCCTGGCAGAGATTTTAAAACTAAGTCTCCTCAACCATGAAAATCTTGTCAATCTCGCTGGTTATTGTGCTGATGGCGATCAACGTCTTTTGGTGTATGAATTCATTTCTGGGGGTTCTCTAGAAGACCGTCTTTTtgGAAATGGAGATAAGGCACCTTTAGATTGGTTCACGAGAATGAAAATAGCATCTGGTGGTGCGAGAGGACTACAATACTTGCACGAGGAGGCCAATCCTCCTGTTATATACAGGGACATGAAATCATCCAACATCTTGCTGGACGAAGATCTTAACCCAAAACTAAATGATTTCGGACTTGCCAAGCTAGCTGGGGGAGATAAGATGAATCCTGCTACTCAGAGAGTTATGGGTACTTATGGTTATAGTGCTCCAGAGTATGTAAGATCAGGACACATCACTTTAAAATCAGATGTTTACAGTTTTGGAGTTGTCTTGTTGGAACTCATAACTGGGCGACGAGCTATTGATACTACAAAACCAAATGACGAGCAAAACTTAGTTTCATGGGCACAACCCATATTCAGAGACCCAAAGAAGTTCCCGGATATGGCAGATCCacttcttaataaaaatttcccaGAAAAGGATTTGAATCAAGCAGTTGCTATAGCAGCCATGTGTCTGCAAGAGGAAGCGGCAGCCCGTCCTTTAATTAGCGACATTGTAACAGCTTTAAGTTTCCTTTCCGTGGTTCCTCCAGAGGTGATTCCTTCCTCTCTCCCACCTCCCGCCTCGTCTTCTCAAGAGAGTGTTACTACCGAAGAGAATGCTCCTGCTAAGAAAATGCACTCCAAATCAAACCGCAAAAGCAGCAAGAGATCAAGAAATGGATCCAGCCAGAGGAGCAGCCCTTCTTCTTCTGAAGATGGAAGTGTTTCTTCAAGCCGTAGAAAATCAGGGAGGATTAAGGGTAGCAGAAAATCTTCTTCCAAAGCTTTAAGCCGTAATTCTAGCTCAGGATCAGAGGACGATAAAAGCCGCAAGAGCAGCAGAAAATATTCTGGCAAAGCTTTAAGCCACAAGAGTAGCATGGAATCGGAGGATGGATTCGTTACGTTTGAGCACAGCGAGAGCAAAGCATCGCATGGATCGGGCAATTACAGCAGCGGCGAATCAGAGGATGAAGATGGTTCATGTGAAGAGTG 1514 0.4439 MNCFPCFSSQRSKKNLSKREHGSSPEEDSPPPPPKPAEVKPKADEPKVQDEQPAAPNIQAQTFTFRELASATKNFRQECLLGEGGFGRVYKGTIAKTGQVVAVKQLDRNGLQGNKEFLAEILKLSLLNHENLVNLAGYCADGDQRLLVYEFISGGSLEDRLFGNGDKAPLDWFTRMKIASGGARGLQYLHEEANPPVIYRDMKSSNILLDEDLNPKLNDFGLAKLAGGDKMNPATQRVMGTYGYSAPEYVRSGHITLKSDVYSFGVVLLELITGRRAIDTTKPNDEQNLVSWAQPIFRDPKKFPDMADPLLNKNFPEKDLNQAVAIAAMCLQEEAAARPLISDIVTALSFLSVVPPEVIPSSLPPPASSSQESVTTEENAPAKKMHSKSNRKSSKRSRNGSSQRSSPSSSEDGSVSSSRRKSGRIKGSRKSSSKALSRNSSSGSEDDKSRKSSRKYSGKALSHKSSMESEDGFVTFEHSESKASHGSGNYSSGESEDEDGSCEE 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03520 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Bva13g03520 504 Gene3D Transferase(Phosphotransferase) domain 1 152 354 - -
Bva13g03520 504 SMART serkin_6 75 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva13g03520 504 MobiDBLite consensus disorder prediction 464 478 - -
Bva13g03520 504 MobiDBLite consensus disorder prediction 480 495 - -
Bva13g03520 504 PANTHER OS07G0668900 PROTEIN 1 433 - -
Bva13g03520 504 MobiDBLite consensus disorder prediction 361 504 - -
Bva13g03520 504 Pfam Protein kinase domain 77 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva13g03520 504 PANTHER RECEPTOR-LIKE KINASE LIP1 1 433 - -
Bva13g03520 504 SUPERFAMILY Protein kinase-like (PK-like) 61 377 IPR011009 -
Bva13g03520 504 CDD STKc_IRAK 81 348 - -
Bva13g03520 504 Gene3D Phosphorylase Kinase; domain 1 45 151 - -
Bva13g03520 504 MobiDBLite consensus disorder prediction 399 416 - -
Bva13g03520 504 MobiDBLite consensus disorder prediction 364 378 - -
Bva13g03520 504 MobiDBLite consensus disorder prediction 1 59 - -
Bva13g03520 504 ProSiteProfiles Protein kinase domain profile. 75 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva13g03520 504 ProSitePatterns Protein kinases ATP-binding region signature. 81 104 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03520 Bva-Chr13 23881903 23884485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03520 1 402 Glycoside Hydrolase AT3G07070 59.233 2.37e-167 477
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Bva13g03520 Pkinase 2.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03520 - - gmx:100807682 504.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g03520 13 23881903 23884485 Bva13g03520 13 23881903 23884485 ECH