Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03516 ATGGCGGCAAACGAGGCAAATGCCTTGGAGTTGAAGGACAAATTGCGGGTACTGGTAAATAATATTGTAGACGAAGACAATGTTTCGGTAGAGGCCGCCGACGAAGCTATTAGGACACTATCTGCTTTAAAGGATTTGAAATTAAAGAGGTCGCTCTCTCAGAAATTGGATGAATTAGCCGTACCTCCGGAATTCCGCTGCCCTATTTCAAGAGAGCTAATGAGGGATCCTGTTATCTTGGCTACTGGACAGACTTATGATCGACCCTTTATCCAAAGGTGGTTGAACGAAGGGCACAGAACATGCCCTCAAACTCAGCAAGTACTCTCTCACTCCATGCTTACTCCTAATTACTTAGTCCGGGACATGATTTCACAGTGGTGTAAGGAGCATGGCATTGAGCTGCCAAAACCTGCTCGGGATGTTGATGAAGAAGTGATAACTGATGCAGACAGAGATCGTTTGAATTCTTTGCTTTCTAAGTTGTCATTGTCCATTACCCATCAGAAAGAGGCTGCAAAAGAGCTTCGGCAGCTAACAAAACGAATGCCTTCATTTCGAACCCTTTTTGGGGAGTCCAGTGATGTGATTCCACAGTTGCTGAGTCCATTATCGCCTGGCATGGCATATATACATCCTGATCTCCATGAAGACCTAATCACAACTGTTCTAAATCTGTCAATTCATGATGACAACAAGAAAAGATTAGCCGAAAATCCAATGGTCATTCCTCAGCTCATTGATTCCTTAAAATCTGGAACCATTCAAACAAGAAGTAATGCTGCTGCAGCAATTTTCACCTTATCTGCTATTGATACCAACAAGCACCTCATTGGAAAATCTGAagctattaaatatttgattgaaCTTTTACAAGAGGGACATCCATTGGCCATGAAAGATGCAGCCTCAGCGTTATTCAGCTTATGTCTTGTGCATGAAAACAAAGGGAGGACAGTCCGCGAAGGGGCTGTCCAGGTTATCCTGAACAAGATCATGGACCACGTTCTTGTTGATGAATTGTTGGCTATGCTGGCTCTTCTCTCTAGCCATCCAAAGGCTATTGAAGAAATGTGTAATCTGGGTGCTGTCCCCTTCTTTCTCGGCGTGATAAGGGAGAGCACGTCTGAAAGAAGCAAGGAAAACTGTGTTGCAATACTACATACAATCTGTTTCAGCGATAGAACAAAATGGAAGGAAATTAGACAAGATGAAAAAGCCAACGGCACACTTTCTAAGCTTGCTCAGAGTGGAACTTCAAGGGCCAAGAGGAAGGCTAATGGTATTCTTGACAGACTCAATAAATCTCCCTCCTTAACACACACTGCTTA 1331 0.4298 MAANEANALELKDKLRVLVNNIVDEDNVSVEAADEAIRTLSALKDLKLKRSLSQKLDELAVPPEFRCPISRELMRDPVILATGQTYDRPFIQRWLNEGHRTCPQTQQVLSHSMLTPNYLVRDMISQWCKEHGIELPKPARDVDEEVITDADRDRLNSLLSKLSLSITHQKEAAKELRQLTKRMPSFRTLFGESSDVIPQLLSPLSPGMAYIHPDLHEDLITTVLNLSIHDDNKKRLAENPMVIPQLIDSLKSGTIQTRSNAAAAIFTLSAIDTNKHLIGKSEAIKYLIELLQEGHPLAMKDAASALFSLCLVHENKGRTVREGAVQVILNKIMDHVLVDELLAMLALLSSHPKAIEEMCNLGAVPFFLGVIRESTSERSKENCVAILHTICFSDRTKWKEIRQDEKANGTLSKLAQSGTSRAKRKANGILDRLNKSPSLTHTA 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03516 443 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 5 441 - -
Bva13g03516 443 ProSiteProfiles U-box domain profile. 60 134 IPR003613 GO:0004842|GO:0016567
Bva13g03516 443 Pfam U-box domain 61 131 IPR003613 GO:0004842|GO:0016567
Bva13g03516 443 PANTHER U BOX DOMAIN-CONTAINING 5 441 - -
Bva13g03516 443 SMART Ubox_2 64 127 IPR003613 GO:0004842|GO:0016567
Bva13g03516 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 134 IPR013083 -
Bva13g03516 443 CDD RING-Ubox_PUB 65 107 IPR045210 -
Bva13g03516 443 Gene3D - 155 438 IPR011989 -
Bva13g03516 443 SUPERFAMILY RING/U-box 56 138 - -
Bva13g03516 443 SUPERFAMILY ARM repeat 157 433 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03516 Bva-Chr13 23867999 23870511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03516 123 443 U-box Gene Family AT3G07360 58.232 7.93e-127 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03516 - - gmx:100806619 622.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g03516 13 23867999 23870511 Bva13g03516 13 23867999 23870511 ECH