Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03500 ATGTTGAAGATATTGCGCGTCCTGTCTTGCAGGCAACAATTATCGGAATCACTATTATCAACGAAAGCTGATGTTAGAGACTGCCTATGGCGTCTGCGTGGATATACTTCAGATCGAATATCTGCACCTTATTCCATTTACAAGGGCAAAGCAGCACTCTCTTTGAACCCCTGTCTTCCTACTTTTACCAAGTTGACGTCTGGGATGATCGTTCTTGATCGTCGTGGTTCAATGATGATGACATTCATGCCTGCTATTGGTGAGCGCAAGTATGACTGGGAGAAGAGACAgAGATTTGCTCTTTCAGCAACGGAGGTTGGTTCTCTGATAAGCATGGGCCCCAAAGATTCCTCTGAATTCTTTCATGACCCCTCAATGTTGTCAAGCAATGCTGGTCAAGTCAGAAAGAGCTTATCAATTAAGCCTCATGCAGACGGTACCGGCTACTTTGTGTCTTTGACTGTTGTCAACAACATCTTAAGATCCAGAGAAAACTTTACCGTTCCTGTCACAATTGCTGAATTTGCTGTGATGAAGACAGCTTGCAGTTTTGCATTGCCACATATTATGGGATGGGATCGTGTGACTCATCAGCAATACAGAGGCACAGTTGGGCATCCACCAAAAACTGATCCACAAGTTTTAGACTTAGAGTGGGAAAAGTG 665 0.4391 MLKILRVLSCRQQLSESLLSTKADVRDCLWRLRGYTSDRISAPYSIYKGKAALSLNPCLPTFTKLTSGMIVLDRRGSMMMTFMPAIGERKYDWEKRQRFALSATEVGSLISMGPKDSSEFFHDPSMLSSNAGQVRKSLSIKPHADGTGYFVSLTVVNNILRSRENFTVPVTIAEFAVMKTACSFALPHIMGWDRVTHQQYRGTVGHPPKTDPQVLDLEWEK 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03500 221 SUPERFAMILY ssDNA-binding transcriptional regulator domain 38 201 IPR009044 GO:0003677|GO:0006355
Bva13g03500 221 Pfam Whirly transcription factor 46 180 IPR013742 GO:0003697|GO:0006355|GO:0006952
Bva13g03500 221 Gene3D Transcriptional Coactivator Pc4; Chain A 32 203 IPR009044 GO:0003677|GO:0006355
Bva13g03500 221 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 31 221 - -
Bva13g03500 221 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 31 221 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03500 Bva-Chr13 23799629 23802789 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03500 37 221 Whirly Transcription Factor Family AT1G71260 71.053 2.09e-93 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Bva13g03500 Whirly 4.6e-56 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03500 - - var:108343725 305.834