Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03496 ATGAGAACTTTTTCGGATGGATTGCAAAAATACCAACTGGTTGCGGTGGAAAAAGCATTGGCTTCtattttgttgctttcttGTCTCATCGTCTCTGTTTCTGCCGTCGATGATTGTGATTGCGATGATGAGGAACTCTGGAGCATCCAAAGCATTCTAGAGTGCCAAAAAGTcagtgatttttttattgccGTAGCTTATTTCTCGATCCCCATTGAACTTCTTTACTTCGTTAGTTGCTCCAACGTACCATTCAAATGGGTTCTCCTTCAGTTCATAGCATTCATAGTCCTCTGTGGCTTGACGCATTTACTCAATGGATGGACCTATTACGGACCTCACTCTTTCCAGCTGATTCTCTCTCTTACTATCGCTAAATTCCTTACTGCTCTTGTCTCCTGTGCAACTGCAATAACCCTTTTGACTCTGATTCCTCTTGTTCTCAAAATCAAAGTCAGGGAGCTTTTCTTGAGAAAGAATGTGTTGGAATTAGACCAAGAGGTTGGAAtgatgaaaaaacaaaaagaagcaagTTGGCATGTTCGGATGTTAACCCGACAAATAAGGAAATCTTTGGATAAGCATACTATCTTGTATACCACTCTCGTTGAGCTTTCTAAGACATTGGAATTGCATAATTGTGCAGTTTGGATGCCAAATAAGGACAGACGAGAAATGCACTTAACCCATGAATTGAAAACAAGGTCATCCAACAATTTTCACAATTCTATTCCTACAAACGACCCTGATGTATTAGAGATTAGAAAATGCAAAGGTGTGAGGATTTTGGGTCCCGAATCTGCTCTAGGAGCTGCAAGTGGTGGTGGATCTGGGGAGTCTGTGGCTGTAGCAGCTATTCGCATGCCAATACTTCATGTTTCCAATTTCAAAGGAGGAACTCCGGAGCTGGTTGAGACATCTTATGCTATACTGGTTTTAGTTCTTCCAAATGCAAACTCTAGGGTTTGGAGCAGCCATGAAATGGAGATAGTGGAAGTTGTTGCTGACCAGGTGGCCGTAGCTTTGTCTCATGCTTCTGTTTTGGAAGAGTCTCAGCTTATGAGACAGAAACTGGCAGAGCAGAACCGAGCATTGCAACAGGCTAAAATGAATGCAATGATGGCAAGCCAGGCCAGGGACTCATTTCAGAAAGTGATGAGTCATGGAATGCGGAGGCCTATGCATTCAATCCTTGGCTTGCTTTCAATGTTTCAAGAGGATGATACCATGTCTAAACAAAAGATTATTGTTGACACAATGGTGAAGACTAGCAATGTTCTCTCGAGTTTGATTAATGATGTGATGGAGATTTCAACAAGTGACAAAGGAAGCTTCCGGTTAGAGATGAAACCTTTCCTTCTACATTCCATGATGAGGGGAACTGCTTGCATTGCTAAGTGTTTATGTGTATATAAAGGCTTTAGTTTTGAAATTGATGTTCAAAAGTCTTTGCCTGACCAGGTCATTGGTGACGAGGCAAGGGCCTTTAAAGTAATTTTGCATATCATTGggtatttattgaatttacaCAATCCAGGAGGGACTCTCATTTTCCGGgtttttcttgaaaatgaaagtggGAATAaggatgataaaaatttaggaATATGGAGATCAAGCATGCAAAATGAGTATGCATTTATAAAGTTTGATTTTCAGATAACTGGTATAACTTCTCAGTCTGATGAATCAATTTCGACAAGCCAGCTTGTTGGTAGGACACACAACAACAACGAACCTAGGGAGGGCCTTAGCTTCGCGGTGTGCAAAACACTGGTGCAGATGATGCAAGGTAATATCTGGATATCACCGAATTCTCAGGGGTTGGCACAAAGCATGACGCTTGTTCTCAAGTTTCAGATAGGTTCATCATTTGGAAGGTCCATTTTGGCACCTAAATATTCTTCCAACTTGCAGTTGAGAGGCCTTAGAGTGGTATTAGCGGATAATGATGATGTAAACAGGACGGTAACGAAGAAATTACTTGAGAAACTGGGTTGTGAAGTAACTGCGGTTTCATCTGGGTTTGAATGTCTGAGCGCTATCAGTGCCTCTAGTAACTCGTTCAAAATTATCCTTTTGGATCTTCACATGCCCGAAATGGATGGTTTCCAAGTAGCCACGAGGATCCGCAAGTTCCACAGCCGTAATTGGCCCTTCATCATAGCTCTCACGGCAAGTGCAGAAGAAGACGTCAGGGAGAAATGCATACAGGTGGGAATGAATGGAATCATTCGAAAACCTATTCTTCTCCATCATATAACAGAAGAACTTGCAAGAGTTCTCCAGCGTGCTGGCGAAAATTTGTG 2309 0.4023 MRTFSDGLQKYQLVAVEKALASILLLSCLIVSVSAVDDCDCDDEELWSIQSILECQKVSDFFIAVAYFSIPIELLYFVSCSNVPFKWVLLQFIAFIVLCGLTHLLNGWTYYGPHSFQLILSLTIAKFLTALVSCATAITLLTLIPLVLKIKVRELFLRKNVLELDQEVGMMKKQKEASWHVRMLTRQIRKSLDKHTILYTTLVELSKTLELHNCAVWMPNKDRREMHLTHELKTRSSNNFHNSIPTNDPDVLEIRKCKGVRILGPESALGAASGGGSGESVAVAAIRMPILHVSNFKGGTPELVETSYAILVLVLPNANSRVWSSHEMEIVEVVADQVAVALSHASVLEESQLMRQKLAEQNRALQQAKMNAMMASQARDSFQKVMSHGMRRPMHSILGLLSMFQEDDTMSKQKIIVDTMVKTSNVLSSLINDVMEISTSDKGSFRLEMKPFLLHSMMRGTACIAKCLCVYKGFSFEIDVQKSLPDQVIGDEARAFKVILHIIGYLLNLHNPGGTLIFRVFLENESGNKDDKNLGIWRSSMQNEYAFIKFDFQITGITSQSDESISTSQLVGRTHNNNEPREGLSFAVCKTLVQMMQGNIWISPNSQGLAQSMTLVLKFQIGSSFGRSILAPKYSSNLQLRGLRVVLADNDDVNRTVTKKLLEKLGCEVTAVSSGFECLSAISASSNSFKIILLDLHMPEMDGFQVATRIRKFHSRNWPFIIALTASAEEDVREKCIQVGMNGIIRKPILLHHITEELARVLQRAGENL 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03496 769 Pfam GAF domain 195 342 IPR003018 GO:0005515
Bva13g03496 769 Gene3D - 181 353 IPR029016 -
Bva13g03496 769 Gene3D - 631 766 - -
Bva13g03496 769 SMART HisKA_10 378 443 IPR003661 GO:0000155|GO:0007165
Bva13g03496 769 CDD REC_ETR-like 643 758 - -
Bva13g03496 769 Gene3D - 364 443 - -
Bva13g03496 769 ProSiteProfiles Histidine kinase domain profile. 385 619 IPR005467 -
Bva13g03496 769 CDD HATPase_ETR2_ERS2-EIN4-like 484 617 - -
Bva13g03496 769 ProSiteProfiles Response regulatory domain profile. 644 762 IPR001789 GO:0000160
Bva13g03496 769 Gene3D - 444 622 IPR036890 -
Bva13g03496 769 Coils Coil 348 371 - -
Bva13g03496 769 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 363 443 IPR036097 GO:0000155|GO:0007165
Bva13g03496 769 SMART REC_2 643 758 IPR001789 GO:0000160
Bva13g03496 769 Pfam Response regulator receiver domain 645 757 IPR001789 GO:0000160
Bva13g03496 769 SUPERFAMILY CheY-like 640 764 IPR011006 -
Bva13g03496 769 CDD HisKA 376 438 IPR003661 GO:0000155|GO:0007165
Bva13g03496 769 Pfam His Kinase A (phospho-acceptor) domain 380 443 IPR003661 GO:0000155|GO:0007165
Bva13g03496 769 SUPERFAMILY GAF domain-like 196 345 - -
Bva13g03496 769 SMART gaf_1 193 352 IPR003018 GO:0005515
Bva13g03496 769 PANTHER ETHYLENE RECEPTOR 24 765 - -
Bva13g03496 769 PIRSF Ethylen_sen_hybr_HK 16 769 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Bva13g03496 769 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 24 765 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03496 Bva-Chr13 23773884 23777781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03496 39 767 Miscellaneous Gene Families AT3G04580 63.023 0.0 922
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Bva13g03496 GAF 1e-09 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03496 K14509 - gmx:100805023 1115.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g03496 13 23773884 23777781 Bva04g03427 04 27236420 27240567 ECH
Bva13g03496 13 23773884 23777781 Bva13g03496 13 23773884 23777781 ECH