Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03489 ATGGACCAATCAGTTCTCGACGACATAATCAATCGTCTGCTCGAAGTTCGCGGCCGACCAGGAAAGCAAGTTCAGCTATCCGAGTCTGAGATCCGTCAGCTTTGTGTTATTTCAACAGAGATTTTCTTACAACAGCCTAATTTATTGGAGCTCGAGGCACCCATTAAGATTTGTGGTGACATACATGGCCAATATTCTGATCTATTATGGCTTTTTGAGTATGGTGGATTACCTCCTAATGCCAACTACTTATTTTTGGGGGATTATGTAGATCGAGGGAAGCAGAGTCTAGAAACAATATGTCTTCTCcttgcatataaaataaaatttcctgAGAACTTTTTCCTCTTGAGGGGGAACCACGAATGTGCTTCTATAAACCGTATATATGGATTTTATGATGAGTGCAAGAGAAGATTTAATATTAGAAATCTACAGCGGCCCACTGATGTGCCAGACACAGGTTTGCTTTGTGATCTCCTTTGGTCAGACCCAAGCAAAGATGTCCAAGGTTGGGGTATGAATGACAGGGGAGTTTCTTTTACATTTGGTGCTGATAAAGTGTCAGAGTTCCTTCAAAAGCATGACCTGGATCTTATTTGTCGTGCTCATCAGGTCGTAGAGGATGGATATGAGTTCTTTGCTAATCGACAGCTCGTAACAATATTTTCAGCTCCTAATTATTGTGGAGAGTTTGACAATGCTGGTGCTATGATGAGTGTTGATGATACATTAATGTGCTCTTTCCAAATCGTAAAGCCAGCTGATAAAAAGAAGTTCAATTTTGGAAGTACAACCACTGCTAAGCCCGGAAATTCACCAGCGGGGGTTTTCGGAAGTACAACTACAGCTAAGCCTGGAAACTCTCCAGCCGGTGTGAAgTCCTTCTTGGGTACAAAAGTATG 905 0.4099 MDQSVLDDIINRLLEVRGRPGKQVQLSESEIRQLCVISTEIFLQQPNLLELEAPIKICGDIHGQYSDLLWLFEYGGLPPNANYLFLGDYVDRGKQSLETICLLLAYKIKFPENFFLLRGNHECASINRIYGFYDECKRRFNIRNLQRPTDVPDTGLLCDLLWSDPSKDVQGWGMNDRGVSFTFGADKVSEFLQKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDDTLMCSFQIVKPADKKKFNFGSTTTAKPGNSPAGVFGSTTTAKPGNSPAGVKSFLGTKV 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03489 301 Gene3D - 142 264 IPR029052 -
Bva13g03489 301 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Bva13g03489 301 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Bva13g03489 301 PRINTS Serine/threonine phosphatase family signature 196 216 IPR006186 GO:0016787
Bva13g03489 301 PRINTS Serine/threonine phosphatase family signature 218 234 IPR006186 GO:0016787
Bva13g03489 301 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Bva13g03489 301 SUPERFAMILY Metallo-dependent phosphatases 17 258 IPR029052 -
Bva13g03489 301 Pfam Calcineurin-like phosphoesterase 54 206 IPR004843 GO:0016787
Bva13g03489 301 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Bva13g03489 301 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 142 293 - -
Bva13g03489 301 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 143 - -
Bva13g03489 301 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
Bva13g03489 301 Gene3D - 6 141 IPR029052 -
Bva13g03489 301 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 1 143 - -
Bva13g03489 301 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 142 293 - -
Bva13g03489 301 SMART pp2a_7 26 256 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03489 Bva-Chr13 23745351 23748894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03489 55 140 Calmodulin-binding Proteins AT5G63870 45.977 2.06e-18 82.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g03489 13 23745351 23748894 Bva04g03423 04 27214349 27218028 ECH
Bva13g03489 13 23745351 23748894 Bva13g03489 13 23745351 23748894 ECH