Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03484 ATGAGTACTGGCCATCGGATGGTTGTCACAGATAAGCGCACCGGAAAAACCAAGGGTTATGGATTTGTGAGCTTTGCAAATCCCTCTGACCTCGCTGCTGCTCTTAAGGAGATGAATGGTAAATATGTTGGAAATCGGCCAATTAAACTCCGCAAGAGTAAGTGGAAGGAGAGGACAGATTTTGAGGCCTTGGAAAAACAGAAGGCCCAAGCtcagaagaaattgaaattgccAAGGAAGGGTGTACTGCACAAGTG 257 0.4319 MSTGHRMVVTDKRTGKTKGYGFVSFANPSDLAAALKEMNGKYVGNRPIKLRKSKWKERTDFEALEKQKAQAQKKLKLPRKGVLHK 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03484 85 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 49 IPR000504 GO:0003723
Bva13g03484 85 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 8 85 - -
Bva13g03484 85 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 55 IPR000504 GO:0003723
Bva13g03484 85 Gene3D - 5 80 IPR012677 -
Bva13g03484 85 PANTHER RNA-BINDING PROTEIN 42-LIKE 8 85 - -
Bva13g03484 85 SUPERFAMILY RNA-binding domain, RBD 8 59 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03484 Bva-Chr13 23724041 23725009 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03484 15 67 Eukaryotic Initiation Factors Gene Family AT1G22760 40.000 1.26e-08 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03484 K25079 - gmx:100800281 130.183