Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03480 ATGTGTGTATGTGTTAAAGAAGATAATGATGAATTCCCATCAGTTCCACCTGGCTTTGAGTCATATACATCTTTCTCACTGAAGAGGGTAGGGCACAATGACAAGCAAAATGATGAAAGCAAAACTAGTTGTTCAGCCTCTACAAGTGCTTCCGAATCACAGTCAACTCTGGTGGAAATTGAGGTGAAACTTATTGATACTGCAGAGGTTCCAAGGTCCCTTCGCCGAAGACCATGGATTAACTATGGACGATATTATAACAGTTCAGAGGAGGATTCTGATTGTGAGCGGCTTGATCAAAATTTCTCTTCAAGATCTTGCCTACCTAGGGGAGTCATCCGTGGATGTCCAGATTGTAGTCATTGTCAAAagGTTATTGCCAGATGGCGACCAGAAGATGCTTGCAGACCAACCCTTGAGGATGCTCCTGTCTTCTACCCGACTGAAGAGgagTTTCAAGATACTTTGAAGTATATAGCAAGCATTCGCTTCAGAGCTGAATCATATGGAATCTGTCGCATTGTCCCCCCTTCATCGTGGAAACCTCCTTGCCCCTTAAAGGAAAATAGTATATGGGAGGGTTCTAAATTTGCTACTCGTGTTCAGAGGATTGACAAACTTCAGAATCGTGATTCAATGAGAAAGATTTCAACGAttcataataatatgaaaaggaaaaggagaagatGCAGAAGAACGGGGGTGGACAATGGAACTAGTGGAGGGCCAAATGTGGGATTTTGTGAGGATGGAAGGTTTGGGTTTGAACCCGGTCCAGAGTTGACCTTGGAAGTATTTCAGAAGTATGCAGACGAATTCAAGGTCAGATACTtcagaaaaaatgagaatgtaTCTCATTTGGGAGGTAATACAACCATGTCCAGAGGCACCTGGGAGCCTTCTGTGGAGAACATTGAGGGTGAATACTGGCGGATGGTAGAAAGACCTACAGAAGAAATAGAGgTGCTTTATGGAGCGGATCTGGAAACCGAGGTTTTTGGGAGTGGTTTTCCTAGAAAGTCTAATGAAGTTAGTTCTGTTTCACATGATCAGTATCTAAAATCTGGCTGGAATTTAAGTAACTTTGCTAGGCTTCCTGGATCCGTTCTCTCTTATGAAAGCAGCGATATATCTGGTGTTCTCGTCCCATGGTTGTATATAGGAATGTGCTTTTCCTCCTTTTGTTGGCATGTGGAGGATCACCACTTATATTCATTGAATTACATGCATTGGGGTGCTCCAAAAATATGGTATGGTGTCCCTGGAAAAGATGCTTACAAATTAGAAGAGATCATGAGAAAGCATTTACCAGACCTTTTTGAGGAACAACCTGACTTGCTTCATAAGCTGGTGACGCAGCTTTCTCCATCTATCTTAAAGACCGAAGGAGTACCTGTCTATAGGTGTGCCCAAAACCCTGGAGAGTTTGTTCTGACCTTCCCTCGAGCCTACCATTCTGGGTTCAACTGTGGCTTTAACTGTGCAGAAGCAGTTAATGTAGCTCCAGTTGATTGGCTGCCCCATGGCCAGCTTGCTATGGAGCTATACCAGGAGCAGAGGCGCAGGACTTCTGTATCGCATGATAAACTATTGCTTGGGGCTGCTAGGGAAGCAGTACGAGCGTCCTGGAAGCTTGATTTTCTGAAGAAGAATACTCCTGATATTCTAAGATGGAAAGATGTCTGTGGAAGAGATGGACTTCTAACAAAAGCACTCAAGACACGTGTTGAGAGGGAACGAGTAAGGAGGGAGTTTCTGCACAGTTCTTCGCAAGCATTTAAAATGGAGAACAGTTTTGATGCCAAAAATGAAAGGGAATGCTATATTTGTCTATTTGATTTACACCTATCTGCTGCTGGTTGCCGTTGTTTTCCAGATCGTTATGCTTGCTTGGATCATGCAAAGCAGTTCTGTTCTTGTCCCTGGGATTCCAAATTCTGTCTATTTCGTTATAATAtcaatgaattaaatattctGGTTGAGGCATTGGAAGGAAAATTAAGTGCAGTATATAGATGGGCAAAATTAGATCTTGGGCTAGCGCTAACTTCTTATATCTctgatgaaataatatttaaggaATTGCCAATGCATTCATCGAACTATTCTGATTCATCACGGGCTACTGTGCATAAAGAGATGGCCTTGCATCCATCAGCCATTTCTATAGGAGAAAATTTGATGGATGTCCCAATAAGGGGTCAGGTCATTTTATCAAAAGGCACCGATCAGAGGAGGGCATTGGAAACAGTGTGTCAGTTGAGTCATATGAAGGAAACATCTAATAGCTCAACACCTGCAAGAGAGATAGCTTATCACAAGACTGATTCCAAGAAAGAAGATTCCTGCGGATCGAACATTAGTAGAACATCTGTTTGTCAGTTATCTCAAGAGGACACACCATATGCTTTATGTCTGCCTCTAGCTGAACATGGAGCTGATAAAAGTTCACCTTATGGACAGGGCAATATTATACTTATTagtgatgatgaaaatgatgaacCGAAGATGCCAGATTCAGTTAGAGGGAAAGAACTTTCTCGAAGGGATTTAGAAGCCGCgttaaatatata 2573 0.4081 MCVCVKEDNDEFPSVPPGFESYTSFSLKRVGHNDKQNDESKTSCSASTSASESQSTLVEIEVKLIDTAEVPRSLRRRPWINYGRYYNSSEEDSDCERLDQNFSSRSCLPRGVIRGCPDCSHCQKVIARWRPEDACRPTLEDAPVFYPTEEEFQDTLKYIASIRFRAESYGICRIVPPSSWKPPCPLKENSIWEGSKFATRVQRIDKLQNRDSMRKISTIHNNMKRKRRRCRRTGVDNGTSGGPNVGFCEDGRFGFEPGPELTLEVFQKYADEFKVRYFRKNENVSHLGGNTTMSRGTWEPSVENIEGEYWRMVERPTEEIEVLYGADLETEVFGSGFPRKSNEVSSVSHDQYLKSGWNLSNFARLPGSVLSYESSDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKIWYGVPGKDAYKLEEIMRKHLPDLFEEQPDLLHKLVTQLSPSILKTEGVPVYRCAQNPGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQLAMELYQEQRRRTSVSHDKLLLGAAREAVRASWKLDFLKKNTPDILRWKDVCGRDGLLTKALKTRVERERVRREFLHSSSQAFKMENSFDAKNERECYICLFDLHLSAAGCRCFPDRYACLDHAKQFCSCPWDSKFCLFRYNINELNILVEALEGKLSAVYRWAKLDLGLALTSYISDEIIFKELPMHSSNYSDSSRATVHKEMALHPSAISIGENLMDVPIRGQVILSKGTDQRRALETVCQLSHMKETSNSSTPAREIAYHKTDSKKEDSCGSNISRTSVCQLSQEDTPYALCLPLAEHGADKSSPYGQGNIILISDDENDEPKMPDSVRGKELSRRVFGTLSK 856
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03480 856 PANTHER JUMONJI 14-RELATED 71 689 - -
Bva13g03480 856 Pfam JmjC domain, hydroxylase 384 500 IPR003347 -
Bva13g03480 856 SUPERFAMILY Clavaminate synthase-like 296 544 - -
Bva13g03480 856 SMART cupin_9 354 517 IPR003347 -
Bva13g03480 856 MobiDBLite consensus disorder prediction 829 846 - -
Bva13g03480 856 Pfam jmjN domain 143 176 IPR003349 -
Bva13g03480 856 Gene3D Cupin 127 501 - -
Bva13g03480 856 Pfam C5HC2 zinc finger 607 657 IPR004198 -
Bva13g03480 856 PANTHER LYSINE-SPECIFIC DEMETHYLASE 71 689 - -
Bva13g03480 856 ProSiteProfiles JmjN domain profile. 142 183 IPR003349 -
Bva13g03480 856 MobiDBLite consensus disorder prediction 819 856 - -
Bva13g03480 856 ProSiteProfiles JmjC domain profile. 354 517 IPR003347 -
Bva13g03480 856 SMART JmjN_1 141 182 IPR003349 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Bva13g03480 Bva-Chr13 23712710 23719623 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03480 1 847 JUMONJI Transcription Factor Family AT1G08620 57.126 0.0 909
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Bva13g03480 JmjC 1.9e-46 CL0029
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03480 - - gmx:100800271 1290.4