Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03452 ATGGCCATTGCTACAGAGACTAAGGCCAAGAAAGCAGCCGCGTCGAAGAAGCCTAAGTCCTCGTCGTCGCACCCTCCCTTCGTTGAGATGATAACGGATGCAATTGTGTCTCTCAAGGAGAGGACTGGCTCAAGTCAGTATGCCATCACCAAGTTTATCGAGGAAAAGCATAAGCAGTTGCCACCCAATTTCAGGAAGCTTTTGCTTTACTATCTGAAAAAATCGGTGGCCGCTGGTAAGCTTGTGAAGGTCAAGAATTCATTCAAGCTTCCACCAACTCGATCCAAGGCATCTGCTCCTGCTGCTACTAAGAAGCCTGCAAAAGTTGTGGCTAAAGCCGCATCCAACCCAAAACCTAAAGCTGCCGCGAAGCCGAAACAAGCTGCTAAGCCTAAAGCCGTTGCCACAAAGAAAACCGCTGCCACAAGTGCCAAAGCAACCGCGAAGTCTAAGGTCGCGGCGAAACCAAAAGCGAAGGCAACGGCAAGACCAGCTAAGGTGGCTAAGACATCGGTGAAAGCTTCACCGGGGAAGAAGGTTGTCAAGGCAGCTAAGAAGGCGCCGGTAAAGAACGTGAAGAAGCCCAAGAGTGTCAAATCACCGGTGAAGAAAGCGCCAGCAAAGAAGGCTAAGAAGTA 638 0.5031 MAIATETKAKKAAASKKPKSSSSHPPFVEMITDAIVSLKERTGSSQYAITKFIEEKHKQLPPNFRKLLLYYLKKSVAAGKLVKVKNSFKLPPTRSKASAPAATKKPAKVVAKAASNPKPKAAAKPKQAAKPKAVATKKTAATSAKATAKSKVAAKPKAKATARPAKVAKTSVKASPGKKVVKAAKKAPVKNVKKPKSVKSPVKKAPAKKAKK 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03452 212 PRINTS Histone H5 signature 120 134 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Bva13g03452 212 PRINTS Histone H5 signature 10 31 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Bva13g03452 212 PRINTS Histone H5 signature 159 176 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Bva13g03452 212 PRINTS Histone H5 signature 181 200 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Bva13g03452 212 PRINTS Histone H5 signature 37 54 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Bva13g03452 212 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 23 92 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bva13g03452 212 Pfam linker histone H1 and H5 family 24 90 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bva13g03452 212 Gene3D - 19 99 IPR036388 -
Bva13g03452 212 MobiDBLite consensus disorder prediction 90 212 - -
Bva13g03452 212 MobiDBLite consensus disorder prediction 1 26 - -
Bva13g03452 212 SMART h15plus2 21 87 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bva13g03452 212 SUPERFAMILY "Winged helix" DNA-binding domain 20 104 IPR036390 -
Bva13g03452 212 MobiDBLite consensus disorder prediction 179 212 - -
Bva13g03452 212 PANTHER HISTONE H1 4 212 - -
Bva13g03452 212 PANTHER HISTONE H1.1 4 212 - -
Bva13g03452 212 CDD H15 24 102 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03452 Bva-Chr13 23550326 23551232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03452 25 100 Single Myb Histone (SMH) Gene Family AT1G72740 36.364 2.36e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03452 K11275 - cpap:110811938 132.494