Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03447 ATGGCGAGCCCGCTGGTCAAAGTAAAGAGGGAGACGCTAGAAGCATGCATGACATGCCCTCTTTGTCATAAGCTCTTGAAGGATGCTACAACTATATCTCTCTGTCTTCATACGTTTTGCAGGAGGTGCATATATGAGAAACTCTCAGATGATGAGATGGACTGCTGTCCCGTATGCAATATTGATCTAGGCTGTCTTCCGGTGGAAAAACTTAGGCCAGACCACAATTTACAAGATATTAGGGCAAAAGTATTCCctttcaaaagaagaaaggttaAGGCCCCAGAAGTTGTGCCTTCAATATCACTGCCagcaaaaaggaaggaaagatCACTTTCATCACTGGTGGTTAGTGCTCCCAAAGTTCCAATGCAGACTGGATTTACTGGAAAAAGAACGAAAACTGGTGCAAGAAAGGCTGCTGCTTTGCGAGGGTGTAATTTCAATGTTGAAGAACACGTTAAGAAGGAAGAAACGTATGCTGAAGACAGTCCAGTAAGCTCACGCTCGCCTGATTCATCAAATACCATTGCTCAAAATAAAAGTCAGGATTCTTTCATTGCTGAGCCTTCTAAGAATCATAGACCCAATGAAGATACAGAGAAACTTGTGGAACTTACAGAGGGGAAGGTCGATCTCTGGACACCTTTGAACTGTCTTGTGGAAGCTGCCAACAGAACAAAGTCCTCCAAGTTAAATTCACAAGGGATGTCTATTCCAAAATTAGAGCCGGCATCTACCCCTCATGGTGGATTAGATAGGCCTGAAATCATGGCCAGACCTGAGCTACCTGCTGCCGTTTACCGTGATCTACATATGcctaaaaccaaaaacaaggATAATggagttaaaataaaatttgaaaatgaaaagaatggaAACAGCTCACTTCCAAGACCAGTGAAGCATCGGCGTGTTCGTCCTGCTGGTCAGAAAAGATCAGTAGCATCTGATACGTCTACCTCAGCCCAATTCATGCTAAATGCAACTGGTGGCAGGTGCAACCGAAAAAACAGTCCTATTTGGTTTTCTTTAGTTGCTTCAGAAGATCaGAAAGGAGATGTTCCCTTGCCACAGATCTCATCATGCTATTTAAGAATAAAAGATGGTACAATGCCTGTTTCGTTTATTCTGAAGTACCTAATAAAGAAACTTAATCTTGCCAGCGAAGCAGAGGTGGAAATAATGTGCCGGGGTCAACCAGTGCTCCCATCTTTGCAGCTACACAACTTGGTAGATCTGTGGTTCCGGACAGCTTCAACCTCAAAAAAGATACCGGCATCTGTGGGTTCCTCGGCCAAGGACTTCGTTATGGTTTTGTCGTATTGTCGGAAGCCTATACTTCCTTG 1349 0.4136 MASPLVKVKRETLEACMTCPLCHKLLKDATTISLCLHTFCRRCIYEKLSDDEMDCCPVCNIDLGCLPVEKLRPDHNLQDIRAKVFPFKRRKVKAPEVVPSISLPAKRKERSLSSLVVSAPKVPMQTGFTGKRTKTGARKAAALRGCNFNVEEHVKKEETYAEDSPVSSRSPDSSNTIAQNKSQDSFIAEPSKNHRPNEDTEKLVELTEGKVDLWTPLNCLVEAANRTKSSKLNSQGMSIPKLEPASTPHGGLDRPEIMARPELPAAVYRDLHMPKTKNKDNGVKIKFENEKNGNSSLPRPVKHRRVRPAGQKRSVASDTSTSAQFMLNATGGRCNRKNSPIWFSLVASEDQKGDVPLPQISSCYLRIKDGTMPVSFILKYLIKKLNLASEAEVEIMCRGQPVLPSLQLHNLVDLWFRTASTSKKIPASVGSSAKDFVMVLSYCRKPILP 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03447 449 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Bva13g03447 449 MobiDBLite consensus disorder prediction 289 320 - -
Bva13g03447 449 MobiDBLite consensus disorder prediction 157 202 - -
Bva13g03447 449 SUPERFAMILY RING/U-box 12 83 - -
Bva13g03447 449 MobiDBLite consensus disorder prediction 164 190 - -
Bva13g03447 449 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 1 445 IPR044807 GO:0004842
Bva13g03447 449 MobiDBLite consensus disorder prediction 231 254 - -
Bva13g03447 449 SMART ring_2 19 59 IPR001841 -
Bva13g03447 449 PANTHER UBIQUITIN PROTEIN LIGASE DRIP2, PUTATIVE-RELATED 1 445 - -
Bva13g03447 449 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Bva13g03447 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 111 IPR013083 -
Bva13g03447 449 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03447 Bva-Chr13 23530117 23535478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03447 5 368 C3H Transcription Factor Family AT2G30580 47.011 4.77e-95 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03447 K16277 - gmx:100783999 620.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g03447 13 23530117 23535478 Bva04g03386 04 27006425 27008418 ECH
Bva04g02825 04 24247344 24253110 Bva13g03447 13 23530117 23535478 ECH
Bva13g02748 13 20134139 20140684 Bva13g03447 13 23530117 23535478 ECH
Bva13g03447 13 23530117 23535478 Bva13g03447 13 23530117 23535478 ECH