Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03443 ATGATTAATTTTGACGAAACTGAATTGCGACTGGGCTTGCCTGGTGCCGAGTCTGATTCTGGCATCAAGATTGGCAAGAGAGTTTTCTCCGAGACTACTAGTACTGCTGCTGTTGATTTGAAGCTCAATCTTTCCTCAAATAATGAGTTGCCCTCGGGCTCACACCCAGCAGCCCCCCCACAGCAAAAGCCTAAAGACAGCACCACTGCTCCTCGCGCTAACGACCCAGCAAAGCCACCTGCAAAGGCACAAGTGGTGGGTTGGCCACCAGTCCGATCATTCAGAAAGAACATAGTGTCGGCACAAAAGAACAACAACAGCGGCGAGAAAGGCAGTGGTAGTAGCAGCAACGGCGTGGCCTTTGTGAAGGTTAGCATGGATGGTGCTCCCTATCTACGCAAGGTGGACCTCAAGTTATACGAGAGTTACCAACAACTGTCTGACGGTCTTGCTAAAATGTTCGGCTCTTTCACCATTCATGCTAATTGTGACTCGCAAGGGATGAAGGATTTCTTGAACGAGAGAAAATTGATTGATCTTCTCAATGGTTCTGACTACGTACCAACATACCAAGACAAGGATGGAGACTGGATGCTCGTGGGTGACGTGCCGTGGGAGATGTTCGTTGAATCGTGCAAACGCTTGCGCATAATGAAAGGGTCTGAGGCAATTGGACTTGCACCCAGAGCGGTGGAGAAGTGTAAGAACAGAAGCTG 716 0.493 MINFDETELRLGLPGAESDSGIKIGKRVFSETTSTAAVDLKLNLSSNNELPSGSHPAAPPQQKPKDSTTAPRANDPAKPPAKAQVVGWPPVRSFRKNIVSAQKNNNSGEKGSGSSSNGVAFVKVSMDGAPYLRKVDLKLYESYQQLSDGLAKMFGSFTIHANCDSQGMKDFLNERKLIDLLNGSDYVPTYQDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAVEKCKNRS 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03443 238 ProSiteProfiles PB1 domain profile. 119 220 IPR000270 GO:0005515
Bva13g03443 238 MobiDBLite consensus disorder prediction 1 22 - -
Bva13g03443 238 SUPERFAMILY CAD & PB1 domains 112 219 - -
Bva13g03443 238 MobiDBLite consensus disorder prediction 40 69 - -
Bva13g03443 238 Pfam AUX/IAA family 6 229 IPR033389 -
Bva13g03443 238 MobiDBLite consensus disorder prediction 40 86 - -
Bva13g03443 238 PANTHER AUXIN-INDUCED PROTEIN AUX28 2 231 - -
Bva13g03443 238 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 231 IPR003311 GO:0005634|GO:0006355
Bva13g03443 238 Gene3D - 114 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03443 Bva-Chr13 23520452 23520748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03443 109 228 B3 DNA Binding Superfamily AT4G23980 30.833 1.10e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Bva13g03443 AUX_IAA 3.6e-82 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03443 K14484 - pop:7474609 323.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g03443 13 23520452 23520748 Bva04g03385 04 27002694 27005725 ECH
Bva04g02833 04 24283820 24286074 Bva13g03443 13 23520452 23520748 ECH
Bva13g03443 13 23520452 23520748 Bva13g03443 13 23520452 23520748 ECH