Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03440 ATGGCTGCAGGAAATTCATCTTCAGAGGGATTGGGAGACGATTTCTTCGAGCAGATACTGGCCGTGCCGTCAGCCTACCCTAACAGCGAGTGTGGCAGGACAGCAAGTGAGGTGGGCTCCATGCCAATGTTGATGCGGTTGGGATCTAGTAGAGGCGATGATGGGTTGAGAGGTTCCTTAGGGATAGGGATGGGGATGGGTATCCCTTTGGGGCTGAATTTAGAACAAGGGTTCCGTAGACACGAGGAAGGTGGTAGACGCTTCAGTGATGGCGTTGGTGACGGCAATCATCTCCATTCTAATAATGCTAATAACAGCACTAgttcatcttcctcttctaCTCCTGGAATCACTCAGGAGAGGGATTCGGCGCATGTGAGGGGCATGTTTTCAGCGTTTGGACAATTGCATGCCCAGTTACTCAGACCGGCGGTGCCATCTCCGTCTCCGCCACCCCAGCTTCGCCAGTATCGTCCACCTGGCAGGGTAAGAGCCAGAAGAGGGCAAGCCACTGATCCACATAGTATTGCGGAGCGGTTACGTCGTGAAAGAATTGCTGAACGAATGAAGGCATTGCAGGAATTAGTTCCTAGCGCCAATAAGACGGATAGAGCAGCAATGCTTGACGAAATTGTGGATTATGTTAAGTTCCTAAGACTCCAGGTTAAGGTGCTGAGCATGAGTAGACTGGGTGGAGCTGGTGCAGTTGCTCAGCTTGTTGCTGATGTTCCCTTATCTGCAATGGAGGGTGAAGGTAATCAGCAAGCATGGGAGAAGTGGTCGAATGATGGCACAGAACAAGAAGTTGCAAAACTAATGGATGAAGATGTTGGTGCTGCTCTGCAGTTTCTTCAGTCAAAGGCTCTTTGCATCATGCCTATATCCCTAGCCTCCGCAATTTTCCGTGCGCCTCAGTCAGACTCAGATGCACCAACAGCCTG 941 0.4995 MAAGNSSSEGLGDDFFEQILAVPSAYPNSECGRTASEVGSMPMLMRLGSSRGDDGLRGSLGIGMGMGIPLGLNLEQGFRRHEEGGRRFSDGVGDGNHLHSNNANNSTSSSSSSTPGITERDSAHVRGMFSAFGQLHAQLLRPAVPSPSPPPQLRQYRPPGRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSANKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSAMEGEGNQQAWEKWSNDGTEQEVAKLMDEDVGAALQFLQSKALCIMPISLASAIFRAPQSDSDAPTA 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03440 312 Gene3D - 163 225 IPR036638 GO:0046983
Bva13g03440 312 MobiDBLite consensus disorder prediction 141 171 - -
Bva13g03440 312 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 9 303 - -
Bva13g03440 312 Pfam Helix-loop-helix DNA-binding domain 173 217 IPR011598 GO:0046983
Bva13g03440 312 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 217 IPR011598 GO:0046983
Bva13g03440 312 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 227 IPR036638 GO:0046983
Bva13g03440 312 MobiDBLite consensus disorder prediction 95 119 - -
Bva13g03440 312 SMART finulus 174 223 IPR011598 GO:0046983
Bva13g03440 312 MobiDBLite consensus disorder prediction 84 119 - -
Bva13g03440 312 PANTHER DEHYDROGENASE, PUTATIVE, EXPRESSED-RELATED 9 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03440 Bva-Chr13 23499587 23502619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03440 68 309 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 58.984 1.12e-73 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva13g03440 HLH 8.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03440 - - qsu:112018850 327.405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g03440 13 23499587 23502619 Bva04g03383 04 26985449 26990457 ECH
Bva04g02836 04 24298452 24302990 Bva13g03440 13 23499587 23502619 ECH
Bva13g03440 13 23499587 23502619 Bva13g03440 13 23499587 23502619 ECH