Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03424 ATGGAGCAGTATGAAATACTTGAGCAAATTGGAAAAGGTGCCTTCGGGTCTGCTCTACTTGTGAGGCATaagcatgagaaaaaaaaATACGTGCTGAAGAAGATTCGCCTCGCCCGTCAAACTGAGCGATCTCGTAGATCTGCACACCAGGAGATGGAGCTCATCTCCAAATTAAGAAATCCATTTATTGTGGAGTACAAAGATTCATGGGTGGAAAAGGGCTGCTATGTGTGCATTATTATAGGTTATTGTGAGGGTGGCGATATGGCAGAAGCTATAAAGAAAGCTAATGGTGTACTGTTTCCTGAAGagAAACTTTGCAAGTGGCTTGTTCAACTTCTTATGGCCCTTGACTACTTGCACATGAACCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACGAAAGATCAAGACATACGTCTTGGTGATTTCGGACTAGCTAAAATGCTGACTTCAGATGATCTTGCTTCCTCTGTTGTGGGAACACCGAGCTACATGTGTCCTGAGCTTCTTGCTGATATACCTTATGGTTCAAAATCGGATATTTGGTCCTTGGGATGTTGTATATATGAAATGACATCTCATAAACCTGCTTTTAAAGCATTTGATATACAAGCACTAATCAACAAGATTAATAAGTCCGTTGTGGCTCCACTGCCAACAAAATATTCTAGTGCTTTTCGAGGTCTTGTTAAAAGCATGCTACGGAAAAATCCAGAGCTTAGACCTAGTGCTGCGGAGCTGCTTGGACACCGACATCTTCAACCTTATGTGCTCAAGATCCATCTCAAAATCAATAACCCCAGGCGAAGTACATTAGCAGTTCACTGGCCAGAATCCAACTACGTGAAGAAAACTAGATTTAAGGAGTCAGAATCTGATCCAGTTTCCTTCTATATGGATAAGCGGTATTCTTTCAGGAATGATCGGACTCAAAATCCTAGTGTATCTGGAGCTGATCAAGATTCTGTATGCTCTACCCTAGAAATAGATTGTACCCCGGATAATTTGAACCAAAGGCTAGCTGAATTATCAGTTGGAGATAGCCATGAAGTGAAGTCTATCCATAAGCCTGTTCTTTCCAGAACCTTTAGTTTTGCCAGGACTCCAACAATTACTTCATCGAAAGCTTCTGCCCACACTAAGAAATCTATAGAACCCTCAAAGAATCGTGAGTCGCTTCCTGTTTCACGCAATGCCAGAAAGTCTGTCCATACAACCCGCAGAGCATCGTTTCCACTGCCAACAAGAGTTGCTATTCAACGATCTCCTCGCCGGTCCATAAGTAGTTTACCGGGATCTATAAAATCGCCAGATATTTCAGTCAACTCTCCCCGAATCGATCGGATGGCTGAATTTCCATTGGCATCATATGAAGATCCATTGTTTCCCATCAATAAAGCTTCCACAAATGCACAGGGTTCCTTGGGCTCCCGACAATGTGGTGATCGTTCAATCATGAAAGATAAATGCATGGTTCAGGTGTGTGATATAGCATCTGTCAAGCCTAGTTTGACAGATGCTTGGCAGGGAATTAAGCGCAGCATGTTTCAGCAAAACGATGAGGAGAAAAGTGGCTCCTCTGATCAAAATGCAACTGCCGGAGCATCAAGCCGCACCTCTTCAGACTTGCGCCGCCGGCAGTTTGACACTTCATCTCTCCGACAAAGGGCTGAAGCCTTAGAAGGGTTGCTTGAATTTAGTGCAAGACTACTACAACAGGAAAGGTACGAAGAGCTTGGGGTTTTGTTGAAACCATTTGGGCCTGGAAAGGTCTCCCCAAGGGAAACTGCTATCTGGTTAAGTAAGAGCTTTAAAGAGAACACTCAAACGTG 1847 0.4288 MEQYEILEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTERSRRSAHQEMELISKLRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKANGVLFPEEKLCKWLVQLLMALDYLHMNHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTSHKPAFKAFDIQALINKINKSVVAPLPTKYSSAFRGLVKSMLRKNPELRPSAAELLGHRHLQPYVLKIHLKINNPRRSTLAVHWPESNYVKKTRFKESESDPVSFYMDKRYSFRNDRTQNPSVSGADQDSVCSTLEIDCTPDNLNQRLAELSVGDSHEVKSIHKPVLSRTFSFARTPTITSSKASAHTKKSIEPSKNRESLPVSRNARKSVHTTRRASFPLPTRVAIQRSPRRSISSLPGSIKSPDISVNSPRIDRMAEFPLASYEDPLFPINKASTNAQGSLGSRQCGDRSIMKDKCMVQVCDIASVKPSLTDAWQGIKRSMFQQNDEEKSGSSDQNATAGASSRTSSDLRRRQFDTSSLRQRAEALEGLLEFSARLLQQERYEELGVLLKPFGPGKVSPRETAIWLSKSFKENTQT 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03424 615 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Bva13g03424 615 MobiDBLite consensus disorder prediction 522 546 - -
Bva13g03424 615 MobiDBLite consensus disorder prediction 377 447 - -
Bva13g03424 615 MobiDBLite consensus disorder prediction 426 445 - -
Bva13g03424 615 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Bva13g03424 615 CDD STKc_Nek 3 253 - -
Bva13g03424 615 PANTHER SERINE/THREONINE-KINASE NEK4 1 604 - -
Bva13g03424 615 MobiDBLite consensus disorder prediction 522 554 - -
Bva13g03424 615 Gene3D Transferase(Phosphotransferase) domain 1 84 273 - -
Bva13g03424 615 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Bva13g03424 615 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva13g03424 615 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva13g03424 615 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva13g03424 615 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 604 - -
Bva13g03424 615 SUPERFAMILY Protein kinase-like (PK-like) 1 311 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03424 Bva-Chr13 23434923 23440428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03424 10 259 MAP Kinase Kinase Kinase AT1G53570 31.765 3.17e-36 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Bva13g03424 Pkinase 5.1e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03424 K08857 - gmx:100804898 1004.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g03424 13 23434923 23440428 Bva13g03424 13 23434923 23440428 ECH