Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03419 ATGGCCGTCGGGAAAAACAAGAGGATATCGAAGGGGAAGAAGGGAGGCAAGAAGAAGGCTGCCGATCCCTTTGCTAAGAAGGATTGGTATGACATCAAGGCACCTTCCATGTTCAACCAAAGGCAGGTCGGAAAGACTCTAGTCACCAGGACACAAGGCACTAAGatcgcatccgaaggactTAAACATAGAGTGTTTGAGATCTCCCTTGCGGATCTTCAGAAGGACGAGGACCATGCCTTCAGGAAGATCCGTTTAAGAGCAGAGGATGTGCAAGGAAGGAATGTGCTCACCAACTTCTGGGGTATGGACTTCACCGCAGACAAGCTGAGGTCATTGGTTCGCAGATGGCAAACATTGATTGAGGCCCATGTCGATGTCAAGACTACTGACAACTACTCTTTGAGGATGTTCTGCATTGCATTTACAAAAAGGCGTGCAAACCAGGTCAAAAGAACCTGTTATGCTCAAACAAGTCAGATTCGCCAGATTCGCCGCAAGATGAGGGAAATTATGATAAACCAGGCTGCTTCTTGTGATCTGAAGGAGTTGGTTGTTAAGTTTATTCCTGAGATGATTGGAAGGGAGATTGAAAAGGCTACTTCCAGCATCTACCCACTACAAAATGTTTTCATTCGCAAAGTCAAGATCCTGAAATCCCCAAAGTTTGACCTTGGCAAGTTGATGGAGGTTCACGGTGACTATTCTGAGGATATCGGTACAAAGATAGACAGACCTGCTGACGAAACTGTGGAGGTTGAGGCTGAAGTTGTTGGAGCTTA 782 0.4514 MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSMFNQRQVGKTLVTRTQGTKIASEGLKHRVFEISLADLQKDEDHAFRKIRLRAEDVQGRNVLTNFWGMDFTADKLRSLVRRWQTLIEAHVDVKTTDNYSLRMFCIAFTKRRANQVKRTCYAQTSQIRQIRRKMREIMINQAASCDLKELVVKFIPEMIGREIEKATSSIYPLQNVFIRKVKILKSPKFDLGKLMEVHGDYSEDIGTKIDRPADETVEVEAEVVGA 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03419 260 Pfam Ribosomal S3Ae family 16 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
Bva13g03419 260 PANTHER 40S RIBOSOMAL PROTEIN S3A 1 259 - -
Bva13g03419 260 MobiDBLite consensus disorder prediction 1 15 - -
Bva13g03419 260 MobiDBLite consensus disorder prediction 1 21 - -
Bva13g03419 260 ProSitePatterns Ribosomal protein S3Ae signature. 61 73 IPR018281 GO:0003735|GO:0005840|GO:0006412
Bva13g03419 260 PANTHER 40S RIBOSOMAL PROTEIN S3A 1 259 - -
Bva13g03419 260 Hamap 40S ribosomal protein S1 [RPS3A]. 1 258 IPR027500 GO:0003735|GO:0005840|GO:0006412
Bva13g03419 260 SMART Ribosomal_S3Ae_2 15 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03419 Bva-Chr13 23416668 23419129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03419 1 260 Cytoplasmic Ribosomal Protein Gene Family AT4G34670 83.969 8.60e-161 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03419 K02984 - zju:107412158 440.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g03419 13 23416668 23419129 Bva04g03369 04 26923039 26925356 ECH
Bva13g03419 13 23416668 23419129 Bva13g03419 13 23416668 23419129 ECH