Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03393 ATGGGTTGTGTAATTAGTCGAGAAGTGTCGTCGGGCATAGTCTCTGAGGTGAGAGAAGAGCGGAGTGTGAGTGCTGAATCTAATAGGAAGACGGACGAAGTCTCGGTGAAGAATGCTGATAGGAATCTGGTAGAGGTTCAGAACGGTGGGAACCAGAAGGAAGACAAGAATGGTGGTGATAATCGGGTTCCGCGGCCACGGGGTGAAAGAAGATGGCCAAAGCCAAACCTAAGGCTAAGTAATCCGCCCAAACATTTGCAGGGGGAGCAAGTAGCGGCTGGTTGGCCGCCATGGCTCACGGCAGTTTGTGGAGAAGCACTCAGTGGGTGGATTCCAAGAAAGGCCGACacatttgagaaaattgatAAGATTGGGCAAGGAACATATAGTAATGTATACAAAGCTAAAGACATGTTGACCAGTAAAATAGTTGCACTCAAGAAGGTTCGATTTGACAATTTGGAACCTGAGAGTGTAAAATTCATGGCTAGAGAGATTATTATTTTGCGAAGATTGAACCATCCCAATGTTGTAAAGTTGGAAGGTCTTGTTACATCAAGGATGTCCTGTAGTTTGTATCTGGTGTTTGATTACATGCTACATGATCTTGCTGGTCTTGCTGCAAGCCCAGGAATCAAGTTCACGGAGCCTCAGGTCAAATGTTACATGCATCAGCTCCTATCTGGACTTGAGCATTGCCATAACCGTAACATACTTCACCGTGATATTAAAGGGTCCAATCTTCTTATTGACGATGGAGGAATACTTAAGATTGCTGACTTTGGACTTGCCTCTTTCTTTGATCCAAATCACAGGCACCCCATGACTAGTCGTGTAGTTACTCTTTGGTATCGACCTCCTGAGTTGCTTCTTGGTGCCACTGATTATGGTGTGGGCGTAGACCTCTGGAGTGCAGGTTGCATTTTAGGAGAGTTATTGGCGGGAAAGCCAATCATGCCTGGTCGTAATGAGGTAGAGCAACTGCACAAGATATACAAACTATGTGGTTCACCTTCCGATGAGTATTGGAAGAAGTCAAAGTTGCCTAATGCTACCTTGTTTAAACCCCGTGAGCCCTACAAGAGATGTATAAGAGACACATTCAAAGATTTTCCGCCTTCTGCTTTGCCCCTTATTGATACCCTTCTTGCAATTGATCCAGCAGAACGGAAGACTGCCTCGGATGCTTTGAGAAGTGAGTTTTTCACAACAGAACCTTACGCCTGTGATCCTTCTAGTCTTCCAAAGTATCCACCAAGCAAGGAAATGGATGCTAAACGACGGGATGATGAAGCTAGGAGACTAAGAGCCGCAGGCAAAGCTCAGGTTGATGGTGTGAGGAAAACACGAACGCGTGACCGTGCTATTAAAGCTGTTCCTGCTCCCGAAGCCAATGCTGAGCTTCAATCTAATATTGACAGACGGCGTCTAATCAGTCATGCAAATGCTAAGAGTAAGAGTGAAAAGTTTCCTCCACCACATCAAGATGGACAACTTGGGTACCCTTTGGGATCTTCTCATCATATTGATCCAGACATTGTTCCTCCTGATGTCCCTTTCAGTTCAACCTCATTTACCTATTCAAAGGAACCATTCCAAGCGTGGTCAGGTCCCATTGCTGCCCCAAAGCGGAAGAAACAAATTTCAGGTGAAACAATGGATTTATCAAAACCCTTCAAGGATAAGgttaaaggaaagaaaatcatagttta 1712 0.4428 MGCVISREVSSGIVSEVREERSVSAESNRKTDEVSVKNADRNLVEVQNGGNQKEDKNGGDNRVPRPRGERRWPKPNLRLSNPPKHLQGEQVAAGWPPWLTAVCGEALSGWIPRKADTFEKIDKIGQGTYSNVYKAKDMLTSKIVALKKVRFDNLEPESVKFMAREIIILRRLNHPNVVKLEGLVTSRMSCSLYLVFDYMLHDLAGLAASPGIKFTEPQVKCYMHQLLSGLEHCHNRNILHRDIKGSNLLIDDGGILKIADFGLASFFDPNHRHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILGELLAGKPIMPGRNEVEQLHKIYKLCGSPSDEYWKKSKLPNATLFKPREPYKRCIRDTFKDFPPSALPLIDTLLAIDPAERKTASDALRSEFFTTEPYACDPSSLPKYPPSKEMDAKRRDDEARRLRAAGKAQVDGVRKTRTRDRAIKAVPAPEANAELQSNIDRRRLISHANAKSKSEKFPPPHQDGQLGYPLGSSHHIDPDIVPPDVPFSSTSFTYSKEPFQAWSGPIAAPKRKKQISGETMDLSKPFKDKVKGKKIIV 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03393 570 ProSiteProfiles Protein kinase domain profile. 118 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva13g03393 570 MobiDBLite consensus disorder prediction 55 74 - -
Bva13g03393 570 Pfam Protein kinase domain 118 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva13g03393 570 MobiDBLite consensus disorder prediction 16 88 - -
Bva13g03393 570 SMART serkin_6 118 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva13g03393 570 CDD STKc_CDK9_like 118 402 - -
Bva13g03393 570 MobiDBLite consensus disorder prediction 420 449 - -
Bva13g03393 570 Gene3D Phosphorylase Kinase; domain 1 105 200 - -
Bva13g03393 570 SUPERFAMILY Protein kinase-like (PK-like) 113 409 IPR011009 -
Bva13g03393 570 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Bva13g03393 570 MobiDBLite consensus disorder prediction 16 39 - -
Bva13g03393 570 ProSitePatterns Protein kinases ATP-binding region signature. 124 147 IPR017441 GO:0005524
Bva13g03393 570 MobiDBLite consensus disorder prediction 412 449 - -
Bva13g03393 570 PANTHER OS01G0367700 PROTEIN 50 545 - -
Bva13g03393 570 Gene3D Transferase(Phosphotransferase) domain 1 201 441 - -
Bva13g03393 570 PANTHER CELL DIVISION PROTEIN KINASE 50 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03393 Bva-Chr13 23273883 23278682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03393 110 442 Core Cell Cycle Gene Families AT5G10270 51.576 7.87e-120 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Bva13g03393 Pkinase 1.1e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03393 K08819 - gmx:100817289 942.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g03393 13 23273883 23278682 Bva04g03349 04 26801792 26806481 ECH
Bva13g03393 13 23273883 23278682 Bva13g03393 13 23273883 23278682 ECH