Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03370 atGGCGAATGTGGATCAGCAGAGAGATTATAGTCAATGGGAGGGTCAACAGAATTCTGCAAACAAACCAAAGATGGCCCCGATGGATGATGGCGTTGATGTTCAACGTAAAAAACAAGTAttcaagttttcttcttctgcttccGCCCAAGACCTAAGGCATCTGCAGttggagaaagagaaagacgATGATTCATCTCCTAGAGGAGTCATAGAAGCCTGCATTCAAGGCCGTGACTCTCCCAAATCACCTGAAGTTCAGAACGGTTGCACAACGCTATCTCACTGGACCTGGTCCAAATTTTTCAAAgtatggaaaaagaaatcaattaagcGCATACCATCTTTCCCTCCTATTGGCGTACCAAAAATGCCAAAGTGGAAAAGCAGAAGCACTAGAGAGAATAATCCTGTTCTAACTGAAATATACAATTTCAAGTCATCATTGGTGAATTTCAGCTACCATGAGCTCAAGAATGCAACCAACAATTTCGCCAGTGAACATATAATTGGAAGAGGTGGTTATTCTGAAGTTTACAAGGGGCATCTCAAAGATGGAAAACTAGTAGCTATAAAGCGACTAACTAAAGGGACTCCGGATGAAAGGACTGCAGGGTTTTTATCTGAGCTTGGCATTATTGCTCATGTCAACCATCCTAACACAGCAAAGCTTATTGGATGTGGTGTAGAAGGAGGAATGCACCTAATCTTCGAGCTATCTCCGCTGGGAAGTTTAGGATCTCTACTTCATGGTTCACAAGATAACAAATTAGATTGGAGTAAAAGGTACAAAATTGCTCTAGGAACAGCTGATGGTCTTCTCTACCTTCATGAGAGTTGTCACAAGCGAATCATTCATAGAGATATCAAGGCAGAGAACATTCTGCTCACAGAAAATTTTGAGCCACagattTGTGACTTTGGCCTGGCAAAGTGGTTACCCAAAGAGTGGACTCACCATAATGTATCAAAATTCGAAGGCACATTTGGGTATTTCGCCCCTGAATATTTCATGCACGGTATAGTAGATGAGAAAACCGATGTTTATGCATTTGGGGTTATACTCTTGGAGCTTATAAGTGGGCGTCGAGCTGTGGATCATTTGCAGAAGAGTGTTGTGTTATGGGCAAAGCCTTTGCTTGACGATGACAATATTAAGGAACTTGTTGATCCTTCTCTTGGTGATAATTATGACCCAGAACAGATGGATCGTGTTGTTTTGACTGCATCTCTCTGTGTTGAGCAGTCTCCCATTCTACGCCCCCGCATGAGTCAGATTGCAATACTACTAAGAGGTGATGGCCATGTTCAGGATTCTGcaaaagaaagccaaaagaAGAAGGCTCTCCTAAGAACATATTCAGAAGAGTTAATGGATGCCCAAGAATACAACTcaacaaaatatctaaatgatcTCAATCGGCACAAGCAGCTTGTCTTGGCTTCTTGTTCTTG 1454 0.3941 MANVDQQRDYSQWEGQQNSANKPKMAPMDDGVDVQRKKQVFKFSSSASAQDLRHLQLEKEKDDDSSPRGVIEACIQGRDSPKSPEVQNGCTTLSHWTWSKFFKVWKKKSIKRIPSFPPIGVPKMPKWKSRSTRENNPVLTEIYNFKSSLVNFSYHELKNATNNFASEHIIGRGGYSEVYKGHLKDGKLVAIKRLTKGTPDERTAGFLSELGIIAHVNHPNTAKLIGCGVEGGMHLIFELSPLGSLGSLLHGSQDNKLDWSKRYKIALGTADGLLYLHESCHKRIIHRDIKAENILLTENFEPQICDFGLAKWLPKEWTHHNVSKFEGTFGYFAPEYFMHGIVDEKTDVYAFGVILLELISGRRAVDHLQKSVVLWAKPLLDDDNIKELVDPSLGDNYDPEQMDRVVLTASLCVEQSPILRPRMSQIAILLRGDGHVQDSAKESQKKKALLRTYSEELMDAQEYNSTKYLNDLNRHKQLVLASCS 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03370 484 SMART serkin_6 164 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva13g03370 484 MobiDBLite consensus disorder prediction 53 68 - -
Bva13g03370 484 Gene3D Phosphorylase Kinase; domain 1 126 238 - -
Bva13g03370 484 PANTHER OS08G0249100 PROTEIN 43 477 - -
Bva13g03370 484 ProSiteProfiles Protein kinase domain profile. 164 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva13g03370 484 ProSitePatterns Protein kinases ATP-binding region signature. 170 192 IPR017441 GO:0005524
Bva13g03370 484 Gene3D Transferase(Phosphotransferase) domain 1 241 457 - -
Bva13g03370 484 MobiDBLite consensus disorder prediction 1 68 - -
Bva13g03370 484 MobiDBLite consensus disorder prediction 1 23 - -
Bva13g03370 484 ProSitePatterns Serine/Threonine protein kinases active-site signature. 284 296 IPR008271 GO:0004672|GO:0006468
Bva13g03370 484 Pfam Protein tyrosine and serine/threonine kinase 167 426 IPR001245 GO:0004672|GO:0006468
Bva13g03370 484 SUPERFAMILY Protein kinase-like (PK-like) 143 429 IPR011009 -
Bva13g03370 484 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-PROTEIN KINASE RBK2 43 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03370 Bva-Chr13 23147264 23151140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03370 147 481 Trihelix Transcription Factor Family AT1G70460 39.535 5.65e-72 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Bva13g03370 PK_Tyr_Ser-Thr 2.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03370 - - cam:101512181 641.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02883 13 20872645 20875415 Bva13g03370 13 23147264 23151140 ECH
Bva05g01937 05 14891321 14894826 Bva13g03370 13 23147264 23151140 ECH
Bva10g01592 10 10772235 10775549 Bva13g03370 13 23147264 23151140 ECH
Bva13g03370 13 23147264 23151140 Bva13g03370 13 23147264 23151140 ECH