Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03352 ATGTGTTTGCCTgaaggagagagagatagCGAGAGAGGCATGGCACTCGAAGCATTTGTTTATCCACAAGACCCATTTGGTTACGATGGCAAAGATCTCTTCACCAGCTTGttaggaggaggaggaggaaccAACTGGGTTTATGATGATTTCAACCTTGGAAAACAAGAAGATCAAGGCACCATCGGTTTTCTCGAGAACCAAACGGAAAATAATTATGCTTACACAGATTGGAATTGTTCTCCTTCATCATCAATGTTACCCCACTTGAATGAATTGCATCTCTCCAATTCTAATCTCTCAGAGACCACCACCAATGTCAGTGACCCAACTCCAAGCGAAGCCAACAACTTAGATAGCTCAACTTCCGCGGTTACACGTCCTAAACGACGCAGGGCAAGAACCCGGAAGaataaggaagaaattgagaaCCAGAGAATGACTCACATTGCTGTGGAGCGCAATCGAAGAAAGCAGATGAACGAGTATCTCTCGGTTCTTCGTTCCCTAATGCCAGATTCATACGTCCAAAGGGGTGACCAAGCTTCTATAATTGGAGGtgctattaattttgttaaggaGCTTGAGCAGAGGCTGCAATTCCTTGGTGCTCAGAAAGAACCTGCTGAGGGGAAATCTAATGGCGGTGCAACTATGCCCTTTTCAGAGTTCTTCACCTTTCCTCAGTATTCAACAAGTTCTAGTGGCTGTGATACTAGTTCTGTGGCCATGGCTGAGCAAGTGGGTGGTGAGGTTCAAAGTGCTATCGCTGATATAGAGGTGACAATGGTGGAGAGCCAtgcaaatctaaaaataagatCAAAGAGACGACCAAAACAGCTGCTGAAGGTGGTCTCTGGCTTACATACAATGCGTCTCACAATCTTGCACCTAAATGTCACAACCACCGCTGATATTGTCCTCTATTGTTTCAGTGTAAAGGTAGAGGATGACTGCAAGCTGGGTTCAGTGGATGAGATAGCAGCCGCCGTATACCAAATGCTGGACAGGATAAAACAAGAGGCAATGTTGAATTG 1037 0.4176 MCLPEGERDSERGMALEAFVYPQDPFGYDGKDLFTSLLGGGGGTNWVYDDFNLGKQEDQGTIGFLENQTENNYAYTDWNCSPSSSMLPHLNELHLSNSNLSETTTNVSDPTPSEANNLDSSTSAVTRPKRRRARTRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELEQRLQFLGAQKEPAEGKSNGGATMPFSEFFTFPQYSTSSSGCDTSSVAMAEQVGGEVQSAIADIEVTMVESHANLKIRSKRRPKQLLKVVSGLHTMRLTILHLNVTTTADIVLYCFSVKVEDDCKLGSVDEIAAAVYQMLDRIKQEAMLN 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03352 345 CDD bHLH_AtFAMA_like 147 220 - -
Bva13g03352 345 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 144 195 IPR011598 GO:0046983
Bva13g03352 345 SMART finulus 150 201 IPR011598 GO:0046983
Bva13g03352 345 Gene3D - 137 210 IPR036638 GO:0046983
Bva13g03352 345 PANTHER MAX DIMERIZATION, MAD 14 345 - -
Bva13g03352 345 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 14 345 - -
Bva13g03352 345 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 144 210 IPR036638 GO:0046983
Bva13g03352 345 Pfam Helix-loop-helix DNA-binding domain 145 196 IPR011598 GO:0046983
Bva13g03352 345 MobiDBLite consensus disorder prediction 100 124 - -
Bva13g03352 345 MobiDBLite consensus disorder prediction 100 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03352 Bva-Chr13 23049024 23050583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03352 14 315 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 44.578 1.73e-70 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva13g03352 HLH 4.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03352 - - gmx:100777413 400.208