Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03351 ATGACGAGTTCTGGGATGATTTCTCTGTGCTTGCTCCTCCTCCTCTCGCCTGAGATTCCGTTGACCAGAGCACAATCCGGAACCAATGGCGTAAACGACCAGTATTACAACCAGTTCAGCCCCTCCATGGCTATCATCGTCGTCATATTAGTTGCGGCTCTTTTCCTGATGGGCTTCTTCTCCATCTACATCCGCAACTGCTCCGAATCACAATCAAACAGCGTTCGGGCTCTCGCCGGCACTGCCGCCCGTTCCAGGCGCGTTGCACGTGGCCTCGACCCTGCAGTGATTGAAACTTTCCCAACTCTTGAGTATTCTGTAGTTAAGATACATAAGATCGGGAAAGGTGCGTTGGAATGTGCCGTCTGCTTATGCGAATTCGAGGACACCGAAACGCTGCGTCTAATCCCGAAATGCGACCACGTCTTCCACCCGGAGTGTATCGACGAATGGTTGGCTTCTCACACTACCTGTCCCGTTTGCCGAGCCAACCTGGCTCCTCAACCAGGCGAGTCTGTGCATGGAATTCCAGTTCTAAACGCCGACTTAGATATCGAATCACAAAACCAGAACGACGCCATCGAAGCTGCACCCGAGCAACAGAATGCGGAGGTTGACCGGGAACATGAATCAGAGCTGGAGGTTCTAACCGCTAATCGGACGCTGAACCGAAATCGTACGCGGGGGTCTTGGTCTAGCCGGATACGAAGGTTCTCATTTCCACGGTCACACTCGACCGGCCACTCACTGGTCCAACCGGGGGAAGACACGGAACGGTTCACTTTGAGACTGCCGCTGGAAGTGaggaaacaaataataaaccaGAGATTGCATCGGGCCACAAGCTTGGTTATCTTGCCGAGAGAGACTAGTTCAAGGCGTGGCTATCGAACCGGCGGTGATGGTAGTAGCAGAGGCAGGTTTTCCCGGCGGCTTGACCGGGGGTTCAAATCAGATAAATGGGTTTTCACGATGGCCCCGCCCTTCTTAGTGAGGGCATCATCGATTAGGACTCCGAAGGTGGCTAACAGCGCCGGAGAAGAGACCTCCACTCAACCCACTGCGCCCTCAATCGATTCCACTCGGCCCCCGGTTTG 1097 0.5351 MTSSGMISLCLLLLLSPEIPLTRAQSGTNGVNDQYYNQFSPSMAIIVVILVAALFLMGFFSIYIRNCSESQSNSVRALAGTAARSRRVARGLDPAVIETFPTLEYSVVKIHKIGKGALECAVCLCEFEDTETLRLIPKCDHVFHPECIDEWLASHTTCPVCRANLAPQPGESVHGIPVLNADLDIESQNQNDAIEAAPEQQNAEVDREHESELEVLTANRTLNRNRTRGSWSSRIRRFSFPRSHSTGHSLVQPGEDTERFTLRLPLEVRKQIINQRLHRATSLVILPRETSSRRGYRTGGDGSSRGRFSRRLDRGFKSDKWVFTMAPPFLVRASSIRTPKVANSAGEETSTQPTAPSIDSTRPPV 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03351 365 MobiDBLite consensus disorder prediction 341 358 - -
Bva13g03351 365 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Bva13g03351 365 CDD RING-H2_EL5_like 119 162 - -
Bva13g03351 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 168 IPR013083 -
Bva13g03351 365 SMART ring_2 120 161 IPR001841 -
Bva13g03351 365 SUPERFAMILY RING/U-box 115 168 - -
Bva13g03351 365 PANTHER RING FINGER DOMAIN-CONTAINING 11 309 - -
Bva13g03351 365 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 11 309 - -
Bva13g03351 365 MobiDBLite consensus disorder prediction 341 365 - -
Bva13g03351 365 Pfam Ring finger domain 119 162 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03351 Bva-Chr13 23036721 23038056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03351 1 362 Rapid Response to Elicitors AT3G05200 44.236 6.38e-90 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03351 K10664 - gmx:100810865 449.129