LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva13g03317	ATGCAGGACATTTTTGGATCAGTTCGCCGATCACTGGTATTCCGTACTTCGCCGGAGAACGAAGAAGCCCCGCTTGGAGGAACCCTAGTAGATAAGATTAATTCTTGCATCCGCAAGTCCAGAGTGTTCTCTAAACCCTCGCCGGCTTCACCGCCATTACCACCGGTCCCCAAGGATACTTTATCAGTGATCCGATGGCGCAAGGGAGAGCTAATCGGCTGCGGTGCCTTTGGTCGAGTTTACATGGGGATGAATCTTGATTCAGGCGAGCTTTTAGCAGTGAAACAGGTTCTGATTGCGGCAAATAGTGCTTCCAAGGAGAAGGCACAGACTCACATAAAGGAGCTTGAGGAAGAAGTTAAGCTTCTTAAAGATCTTTCACATCCCAACATTGTTAGATATCTGGGTACAGTTAGAGAGGAGGACAGCTTAAATATCCTTCTGGAGTTTGTACCTGGTGGATCCATATCATCACTCTTGGGGAAGTTTGGAGCTTTCCCTGAGGCTGTTGTAAGAACTTTCACGAAGCAATTATTGCTGGGATTGGAGTACTTGCACAAAAATGGAATCATGCACAGGGACATTAAGGGAGCAAATATTCTTGTAGACAATAAGGCGTGCATAAAACTTGCAGATTTTGGGGCATCCAAGCAGGTCGTTGAGCTGGCTACTATTTCTGGTGCTAAGTCTATGAAGGGTACCCCATACTGGATGGCTCCTGAAGTCATTCTCCAGACTGGGCACAGCTTCTCTGCTGATATATGGAGTGTTGGCTGCACTGTCATCGAGATGGCCACTGGGAAACCACCTTGGAGCCAACAGTACCAAGAGGTTGCTGCTCTCTTCTATATTGGGACAACAAAGTCTCATCCACCTATCCCTGAGCATCTCTCTGCTGGAGCAAAAGATTTTCTGTTGCAATGCTTGCAGAAGGAACCGAATCTGCGGCTGTCAGCAGTAGAGTTGCTTCAGCATCCCTTTGTTACTGGTGAAAACATGGATTCTCTTCCTCGTTCAAGTACTTCTGCCATGGAAAACTCTATGGTTTCTTCGCCATCATGTGCCGTCAACATCAATACCGAAACTTCtCTGTGCTGTTCAGCCCTTCATCCTCAGGAGTcaggagataaaaaaatttggggAATGAATGATGACGACGACATGTGTGAGATTGATGACAAAGATGATTTCCCGGAGGTGGATGTCAAAGTCGGATCTTCTTTGATGtcagaaaattttaagAGTTTCAATCCAATGTCTGATCCGTCAGATGATTGGGGGAGCAAATTTGATGCGAGTTCAGAACTGGAACATAGAGCAGTTAATTTTGATACTGATGAACTTGACATGCCTTCTGGTCACTCTGGGACTACCAATGAGGGGCAGAAagatttttcctttccaaGTGGACCGTCACTCTCTGAGGAAGATGATGAGCTTACGGAGTCAAAAATTAAAGCCTTTTTGGATGAAAAGGCTATAGAACTTAAAAAACTGCAGACACCTTTGTATGAAGAGTTCTACAACACTTTGAATACATCTTCTTCTCCCAAAGTGGTTGAAAACACGAGTGATGAAACTGCTCCAAAGTACTTAAAATTACCTCCTAAAAGTAGGTCACCAAGTCGGGCACCGCTTGGCGGGTCTCCTTCAAATCTTGGTGCTGGAAGTCCTGGAAGTAATGGCTGGTCTCCTTCAAATCTTGGCAATGCAGGTGATCATAGTTCACAGGATATTCCATCATCTCCAATAAATGAATTGAAAGGAATTTTAAGTGACTCCCAGCTGGAGCCAACTAGCCCAAGTTTAAGCTTTTCTGAGAGACAGAGAAAGTGGAAAGAGGAACTTGACCAGGAGCTTGAGAGAAAGCGAGAAATGATGCGCCAAGCAGGTATGGGTGGAAAAACATCATCACCAAAGGATCGAGGTTTGCATCGGCAGCGAGAGCGGACAAGATTTGCCTCTCCCAGCAAATA	1976	0.4448	MQDIFGSVRRSLVFRTSPENEEAPLGGTLVDKINSCIRKSRVFSKPSPASPPLPPVPKDTLSVIRWRKGELIGCGAFGRVYMGMNLDSGELLAVKQVLIAANSASKEKAQTHIKELEEEVKLLKDLSHPNIVRYLGTVREEDSLNILLEFVPGGSISSLLGKFGAFPEAVVRTFTKQLLLGLEYLHKNGIMHRDIKGANILVDNKACIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQEVAALFYIGTTKSHPPIPEHLSAGAKDFLLQCLQKEPNLRLSAVELLQHPFVTGENMDSLPRSSTSAMENSMVSSPSCAVNINTETSLCCSALHPQESGDKKIWGMNDDDDMCEIDDKDDFPEVDVKVGSSLMSENFKSFNPMSDPSDDWGSKFDASSELEHRAVNFDTDELDMPSGHSGTTNEGQKDFSFPSGPSLSEEDDELTESKIKAFLDEKAIELKKLQTPLYEEFYNTLNTSSSPKVVENTSDETAPKYLKLPPKSRSPSRAPLGGSPSNLGAGSPGSNGWSPSNLGNAGDHSSQDIPSSPINELKGILSDSQLEPTSPSLSFSERQRKWKEELDQELERKREMMRQAGMGGKTSSPKDRGLHRQRERTRFASPSK	658

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva13g03317	658	ProSitePatterns	Protein kinases ATP-binding region signature.	72	95	IPR017441	GO:0005524
	Bva13g03317	658	SMART	serkin_6	66	328	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bva13g03317	658	MobiDBLite	consensus disorder prediction	442	481	-	-
	Bva13g03317	658	MobiDBLite	consensus disorder prediction	553	606	-	-
	Bva13g03317	658	Pfam	Protein kinase domain	67	328	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bva13g03317	658	Coils	Coil	99	126	-	-
	Bva13g03317	658	ProSiteProfiles	Protein kinase domain profile.	66	328	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bva13g03317	658	SUPERFAMILY	Protein kinase-like (PK-like)	65	368	IPR011009	-
	Bva13g03317	658	Gene3D	Transferase(Phosphotransferase) domain 1	65	363	-	-
	Bva13g03317	658	Coils	Coil	609	629	-	-
	Bva13g03317	658	CDD	STKc_MAPKKK	65	328	-	-
	Bva13g03317	658	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	1	620	-	-
	Bva13g03317	658	MobiDBLite	consensus disorder prediction	451	469	-	-
	Bva13g03317	658	MobiDBLite	consensus disorder prediction	607	629	-	-
	Bva13g03317	658	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	190	202	IPR008271	GO:0004672\|GO:0006468
	Bva13g03317	658	PANTHER	MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE NPK1	1	620	-	-
	Bva13g03317	658	MobiDBLite	consensus disorder prediction	510	658	-	-
	Bva13g03317	658	MobiDBLite	consensus disorder prediction	639	658	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva13g03317	Bva-Chr13	22913064	22913363	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva13g03317	1	658	MAP Kinase Kinase Kinase	AT1G54960	57.532	0.0	699

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Bva13g03317		Pkinase	3.3e-71	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva13g03317	K20606		-	gmx:100779001	971.074