Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03312 ATGTTTGGTGCAGTGACGGATACACGACACCAGAGCACTGCAGTATCAGGACCCACTTTGATTCCTAAGCGGTTCGTCTGGCCTTATGGGGGAAGCAGGGTGTTTCTAAGTGGTTCTTTCACTAGGTGGTCAGAACATATACCTATGTCTCCGATGGAGGGATGCCCTTCAGTATTTCAAGTTATTTGCAGCTTAACACCCGGATATCATCAGTACAAATTTAATGTGGATGGCGAGTGGCGGCATGATGAGCAGCAACCATTTGTAAGTGGAATCTATGGGGTGGTGAATACGATGCTTTTAGGGAGGGAACCAGATATTCTACCATCTATCTTTTGTCCTGAGATAACTGGTAGATCCCACATGGAGGTTGACAGTGATGTCTTTGGGCACGtgGGAGCCATTCCGAGGATGTCAGAGTCTGATCTGGAGGTCTCTCGCAACCGTATATCTATATTCTTGTCTACACATACTGCTTATGAGTTGCTTCCTAAGTCAGGCAAGGTTGTTTGCTTGGATATCACTTTACCAGTGAAGGAAGCATTCCATGTTCTATATGAAGAGGGAGTACCAACGGTTCCTCTATGGGATTCTTGCAAGAGCCAGATTGTCGGAGTGCTTAGTGCAATGGACTTCATTCTAATATTGAGAGAGCTGGGGAATCATGGGTCAGATTTGACAGAAAAGCAACTTCAGACTCATACAATAGCAGCATGGAAAGAGGGGAAattacaacaacaacaaaaaattgatagcAATGGGGGATCATTTACTCGCCACTTTGTTCAAGCTGGGCCTCATGATTATCTAAAAGATGTggctttgaaaattttgcaaaacAAGGTGGCAACCGTTCCTATTGTCGATTCTTCTTCATCAGATGGTTCATTTCCCGATCTGTTACATCTTGCTTCCCTATCGGGAATACTTAAATGTATATGCAGGCACTTTGAGAATTCATTGAGTTCCTTGCCCATTCTTCAAATACCGATTGGCTCAATACCTTTGGGTACATGGGTACCAAAAGTTGGGGAAACAAATAGACAGCCCCTTGTGAAGTTAGGTCCGAATGATTCCCTTGGTGCTGCCCTATCCTTGTTGGTTCAAGCTGAAGTTAGCTCAATACCAATTGTGGATGATAATGATTCATTGCTTGACATCTATTCACGGAGtGATATTACTGCATTGGCTAAAGATAAAGCTTATGAACAGATAACCACCCTTGATGAAATCAGTATCAGTCAGGCGTTGCTTCTGGGACAAGATGCAAATTCACGTTATAGCTATCACCATGGCCAGAGATATTACATGTGTTTGAGGTCTGACCCATTGCACCAAGTGATGGAACGGTTGGCTAATCCTGGTGTTAGGAGGCTTGTGATTGTGGAGGCTGGCAGCAAGCGTGTGGAAGGGATTATTTCATTGAGTGATGTGTTCAGATTCTTGTTAGGATATGTTGGCCATCATTTCACGTG 1475 0.4271 MFGAVTDTRHQSTAVSGPTLIPKRFVWPYGGSRVFLSGSFTRWSEHIPMSPMEGCPSVFQVICSLTPGYHQYKFNVDGEWRHDEQQPFVSGIYGVVNTMLLGREPDILPSIFCPEITGRSHMEVDSDVFGHVGAIPRMSESDLEVSRNRISIFLSTHTAYELLPKSGKVVCLDITLPVKEAFHVLYEEGVPTVPLWDSCKSQIVGVLSAMDFILILRELGNHGSDLTEKQLQTHTIAAWKEGKLQQQQKIDSNGGSFTRHFVQAGPHDYLKDVALKILQNKVATVPIVDSSSSDGSFPDLLHLASLSGILKCICRHFENSLSSLPILQIPIGSIPLGTWVPKVGETNRQPLVKLGPNDSLGAALSLLVQAEVSSIPIVDDNDSLLDIYSRSDITALAKDKAYEQITTLDEISISQALLLGQDANSRYSYHHGQRYYMCLRSDPLHQVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGYVGHHFT 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03312 491 SUPERFAMILY CBS-domain pair 343 488 IPR046342 -
Bva13g03312 491 ProSiteProfiles CBS domain profile. 429 490 IPR000644 -
Bva13g03312 491 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 13 484 - -
Bva13g03312 491 SUPERFAMILY E set domains 20 100 IPR014756 -
Bva13g03312 491 Gene3D - 139 317 IPR046342 -
Bva13g03312 491 CDD E_set_AMPKbeta_like_N 24 100 - -
Bva13g03312 491 Pfam Glycogen recognition site of AMP-activated protein kinase 21 100 IPR032640 -
Bva13g03312 491 SMART cbs_1 168 217 IPR000644 -
Bva13g03312 491 SMART cbs_1 434 483 IPR000644 -
Bva13g03312 491 SMART cbs_1 350 398 IPR000644 -
Bva13g03312 491 ProSiteProfiles CBS domain profile. 346 403 IPR000644 -
Bva13g03312 491 Gene3D Immunoglobulins 19 101 IPR013783 -
Bva13g03312 491 Pfam CBS domain 347 394 IPR000644 -
Bva13g03312 491 Pfam CBS domain 436 483 IPR000644 -
Bva13g03312 491 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 13 484 - -
Bva13g03312 491 SUPERFAMILY CBS-domain pair 148 319 IPR046342 -
Bva13g03312 491 ProSiteProfiles CBS domain profile. 162 226 IPR000644 -
Bva13g03312 491 Gene3D - 318 483 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03312 Bva-Chr13 22878579 22885745 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03312 1 114 Protein tyrosine phosphatase (PTP) family AT3G01510 30.769 8.61e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03312 - - vvi:100252910 723.776