Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03309 ATGGACAATGAGCAAGATAGCCTGTTGCCAATAGCAAATGTGGGTCGGATCATGAAGCAAATTCTTCCTCCCACTGCAAAGATCTCCAAAGAATGCAAACAAGTAATGCAAGAATGTGCAACAGAGTTCATAAGTTTCGTGACTAGTGAGGCTTCTGACAAGTGTCAGAAGGAGAATCGGAAGACCGTCAATGGGGATGACGTCTGTTGGGCTCTGAGTGCCTTAGGGTTTGATAACTATGCCGAGGCCATAGGAAGGTACTTGCATAAATACAGGCAAGCCGAGAGGGAGAAAGCAGCAAATCAAAGCAAAGGCGATGAAGCATCATCAACCAAAGGAAGCAGACAACAGCAAGAGGAACAAACTGAAATTCATGCTCCACTACAACGTAGGGTTTCTGAGAAGCCTGCAAATCAATCTTG 422 0.4526 MDNEQDSLLPIANVGRIMKQILPPTAKISKECKQVMQECATEFISFVTSEASDKCQKENRKTVNGDDVCWALSALGFDNYAEAIGRYLHKYRQAEREKAANQSKGDEASSTKGSRQQQEEQTEIHAPLQRRVSEKPANQS 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03309 140 SUPERFAMILY Histone-fold 5 128 IPR009072 GO:0046982
Bva13g03309 140 ProSitePatterns NF-YB/HAP3 subunit signature. 39 55 IPR003956 GO:0005634|GO:0006355|GO:0043565
Bva13g03309 140 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-4 1 133 - -
Bva13g03309 140 MobiDBLite consensus disorder prediction 104 123 - -
Bva13g03309 140 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Bva13g03309 140 PRINTS CCAAT-binding transcription factor subunit A signature 36 54 - -
Bva13g03309 140 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Bva13g03309 140 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 9 72 IPR003958 -
Bva13g03309 140 Gene3D Histone, subunit A 1 139 IPR009072 GO:0046982
Bva13g03309 140 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 133 IPR027113 GO:0001228|GO:0006355|GO:0016602
Bva13g03309 140 MobiDBLite consensus disorder prediction 93 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03309 Bva-Chr13 22863662 22864084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03309 4 118 CCAAT-HAP3 Transcription Factor Family AT1G09030 65.833 4.33e-56 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Bva13g03309 CBFD_NFYB_HMF 2.8e-25 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03309 K08065 - pvy:116118428 197.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g03309 13 22863662 22864084 Bva13g03309 13 22863662 22864084 ECH