Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03307 ATGTCAAACATCACAGTTAGCGGCGATAGCTGTAGCTTCTCTACGGAGAACACCGGAGAAGGTGGAGGAGTTAAACGTCAGCTAGAGCTACCGCTCGGCGGTCAGTTTCATTCTCTCACCTCTTCAATTACAACTAACAGCAACGGTTCCAACTCCAACACAGATTCACAGCAGCCACCGCCGCCGGTTAAGAGGAAACGGAGCCTACCAGGAAATCCAGATCCAAACGCTGAGGTGATAGCTCTATCTCCAAACGCCCTGTTGACCACAAACAGATTTATATGCGAAATTTGCAACAAAGGGTTTCAGAGAGATCAGAACCTTCAATTGCACCGGCGAGGCCATAACCTGCCATGGAAGCTGAAACAAAGAAGCAGCTCGGAAGTTCGAAAGCGGGTTTATGTGTGTCCAGAACCTTCGTGCGTTCACCACAACCCAGCTCGTGCATTGGGTGATCTCACTGGAATAAAGAAGCACTTCTGCAGAAAACATGGGGAGAAGAAGTGGAAATGTGACAAATGCTCTAAGAAATATGCAGTGCAATCAGACTGGAAAGCACATTCAAAGATCTGTGGTACTAGGGAGTACAAATGTGACTGCGGCACCATCTTTTCCAGAAGAGATAGCTTCATCACCCATCGAGCTTTCTGTGATGCCTTGGCCGAGGAGAATAACAAACCCAATGAACTGGGTTCAAGCCGTCAACAAATCCCAAACTTGGTCTCCTCGTTGCCAATGGACACAAATCCCAACCCACAACAAATTGGAGCATCAGAATTTAAACATCCTGATATCAAAACAGTGGTCCCAGTCCCTCACCAGCTCATGCCAATGCCTACGAAACCCTTCGACATGGTAGGCGCCGGCGGGGCTTTACTCGCCGGAAGGGACACTTCCTCTCCATCTCTTCAGCTCAGCTCAAACTCACTAAACGTCTTTGACGAAATTCGACACCAGTTAGTTGGCTCACCCCACATGTCCGCCACGGCATTGCTGCAAAAAGCCGCACAAATGGGGGCAATTGTGAGTACCAGCAGCTCCACGAACCCTTCCCTGGCGGAAAAGGGTTTTGTGACAAGCATGGCACCGCCGTCCTTTGGTGCGTTACAACCTCAAAATGGGTCTAGCTTCTTCAACCACTTTGTGCAGAATGGCCAACACCAACAGGATATTCCATCTCAGTATTTCAGTGGGAATAATGGGATGCCTGCAGGTAACGTTGGAATGAACAGTGTGGATATGTTCAACGCTATCTTGGATCAGAGCAAAGCATTGTCCAAGATTATAGAGCAAAATAGAGATAGCAACAATGGAGTTTTGCATGGTGGAGGTGCGATTAATTCTGGTTCTAGTCTCGGCGCTGGAACTAAAGAAAGTGGGGATGTGACGACTCTTGATTTCCTGGGGATAGGAGGTGGTGGAGATGGAGGAGGTGCTCATGGGGATTTCTATGgtcaacaagaagaaaaagcagcAAGACATGAAGCTTGGAGAAACTGGTCAGCCAAGAATGCAGGCTTTGAATCATTCTCAGCAACAAGCAGCATTTG 1550 0.4761 MSNITVSGDSCSFSTENTGEGGGVKRQLELPLGGQFHSLTSSITTNSNGSNSNTDSQQPPPPVKRKRSLPGNPDPNAEVIALSPNALLTTNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRSSSEVRKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKPNELGSSRQQIPNLVSSLPMDTNPNPQQIGASEFKHPDIKTVVPVPHQLMPMPTKPFDMVGAGGALLAGRDTSSPSLQLSSNSLNVFDEIRHQLVGSPHMSATALLQKAAQMGAIVSTSSSTNPSLAEKGFVTSMAPPSFGALQPQNGSSFFNHFVQNGQHQQDIPSQYFSGNNGMPAGNVGMNSVDMFNAILDQSKALSKIIEQNRDSNNGVLHGGGAINSGSSLGAGTKESGDVTTLDFLGIGGGGDGGGAHGDFYGQQEEKAARHEAWRNWSAKNAGFESFSATSSI 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03307 516 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Bva13g03307 516 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 115 IPR013087 -
Bva13g03307 516 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 38 483 - -
Bva13g03307 516 SMART c2h2final6 134 164 IPR013087 -
Bva13g03307 516 SMART c2h2final6 93 115 IPR013087 -
Bva13g03307 516 SMART c2h2final6 169 189 IPR013087 -
Bva13g03307 516 MobiDBLite consensus disorder prediction 34 61 - -
Bva13g03307 516 MobiDBLite consensus disorder prediction 1 21 - -
Bva13g03307 516 Pfam Zinc-finger double-stranded RNA-binding 93 115 IPR022755 -
Bva13g03307 516 Gene3D Classic Zinc Finger 90 191 - -
Bva13g03307 516 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 38 483 - -
Bva13g03307 516 SUPERFAMILY beta-beta-alpha zinc fingers 92 189 IPR036236 -
Bva13g03307 516 MobiDBLite consensus disorder prediction 1 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03307 Bva-Chr13 22843454 22846950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03307 40 343 IDZ Gene Family AT3G50700 55.457 1.08e-115 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva13g03307 zf-C2H2_jaz 7.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03307 - - gmx:100813556 630.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02847 04 24396022 24399465 Bva13g03307 13 22843454 22846950 BWGD
Bva13g03307 13 22843454 22846950 Bva04g03297 04 26544493 26548043 ECH
Bva13g03307 13 22843454 22846950 Bva13g03307 13 22843454 22846950 ECH