Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03306 ATGGATCATGCACGGTCGGCCTCGGGGAATGGCGAGGACAATGCGGGGATTCCAGATGACTTGCGATGCAAGAGGTCAGATGGGAAACAGTGGAGATGCACTGCTATGTCCATGCCGGATAAAACAGTCTGTGAGAAGCACTATATCCAGGCAAAGAAGAGGGCAGCTAATTCTGCAATGAGAGCCAATCTGAAGAAAGCTAAAAGAAAGTCAATAGGCGAGAGTGATATTTATCTGGAGAGCAAGAGTGATGATTTTGATGTACCACTTGCGAGCATGAAAGTTGGGGAACCTCATTCAGGCTCTGGAAAGAAGTACttagagaaaatatcaaaaaatcaGTTTCGCTATACACCAGAGACACCGACCTTAAGGAGTGCGTCTATGCGTCATGCTCCAAAGCCAAATGATGATTCGCCAGATGATGTTCCCCAGTATGAAGAGAATTGGATGCCTTATGAGTCACCTCCTGCTTCTGGCATGGATTCATCCAGGAGAAGATCACAAAGGAGTTTAGAGGCTAATGTTACAACAGAAAACTCTGATGGAAGTACAGATTCATCTGAAGACACTGGTGGACAGACCTGCCATCAGTGCAGAAGGAATGACAGAGACAGAGTTATTTGGTGCCTCAGATGTGATCGGAGAGGATATTGTGATAGTTGTATCTCTACTTGGTACTCAGACAACTCGTTGGAAGAGATTCAGAGGAGCTGTCCTGCATGCCGTGGTGCCTGTAATTGCAAAGTTTGCTTACGGAATGATAATTCAATTAAGGTCCGGATACGTGAGATACCTGTTCTAGATAAGTTACAGTATCTTCACTTGCTGTTATCGTCGGTTCTTCCGGTAGTAAAGCAGACCCATCATGTGCAGTGTTTTGAAGTTgaacttgaaaagaaattgcGTGGTACTGACATAGATCTTCCCAGGACAAAATTGAATGCAGATGAGCAGATGTGCTGCAATTTCTGTAGGATACCCATTACTGACTATCATCGACACTGTCCAAATTGCTCGTATGATTTATGCATTACTTGTTGTCGAGATCTTCGTGAagcaaattttaatcaaaaaccATCAGACCAAGCAAAAATCTCCAATCGTAATATACTAAGTAACATTCCTGATTGGAGATCTAACAGTGATGGCAGCATTCCTTGCCCCCCAAGGGACTATGGTGGCTGTGGTTAttcatcattaaatttaagcCGCATTTTCAAGATGAATTGGGTTGCAAAATTGGTGAAAAATGTGGAGGAAATGGTTAATGGCTGCAGGGTTAGTGATAACGGTGATCGCCTAGAAACCAAGCTAAATGATCTCAGACTTCACCAATATTCTCATAGAGAGGCAAGTGATGATAATTTTCTGTACTGCCCAACCTCTGAAGAACTCAAAACTGATGGGATTGGCAATTTTAGAAAGCATTGGAAAATGGGCCAACCAATTATTGTTAAACAAGTATTTGATATGTCATCCATTTCAAGCTGGGATCCAATGGTCATATGGAGTGGGGTTCGAGAGACAGCagatgagaaaatgaaagatgaGAACAGAATGGTTAAGGCCATAGATTGCTTAGATTTGTCTGAGATTGATATTGAACTTGGTCAGTTCATGAAAGGATACTCTGAGGGCCGTATCCATGAAAATGGTTGGCCACAAATGTTGAAGTTGAAGGATTGGCCTTCACCTAGTGCATCTGAAGAATTTTTGTTGTACCAAAGACCTGAATTTATCAGCAAACTGCCTTTACTTGAATATATTCACTCGAAGTGGGGCCTTCTTAATGTTGCAGCTAAGTTGCCTCATTACTCGTTGCAGAATGATGTAGGACCCaagatttatatatcttaTGGGATCAGTGAGGAACTTGGTAAAGGTGACTCAGTGACCAATCTCCACTTCAATATGCGTGACATGGTGTATCTTTTGGTCCATAGATGTGAAGTGAAGCTGAAGGGCTGGCAGAgaactaaaattgaaaagatacaAAAAGCTTATAAAGAATCTGACCTAAAAGAAACATCCGGGGATCCACCAGTACATTCAGGGGGAACGTCACCCGATTCATCACTTGGTACAGAAAGTGATGGAGTCGATTTGGATTCGAATGAGAAAAATTCAACAATGGATCAAAGTTTTGAAGTTTATTCTAGTGCTGAAACAAATAACAATTGTGAACTTCCATGTGGACAAAATGGAGATGTCTCTGAGAAAACACATCCCGGAGTCCTTTGGGATGTTTTCCGTCGGCAGGATATTCCAAAGCTGACAGAATATTTGAAAATGCATTCCAAAGAATTTAGGAAGCCAGATGATGATATCTCAAATGAATTCGTTATGCCTCTTTGTGATGAAGCTGTTTTTCTGGACCGACATcataaaagaaagttgaagGAAGAATTTGGAGTGGAACCATGGTCATTTGAACAGAATTTGGGGGATGCTATATTTGTCCCCGCTGGTTGCCCTTTCCAAGCAAGGAACGTAATGTCCGCTGTCCAGTTGGGCCTTGACTTTTTATCACCTGAAAGCCTGGCGGAGGCTGTAAGATTGGCTGAGGAAGTCCGCTGTCTGCCAAATGAACATGAATCAAAGCTTCAAGTATTGGAGGTCGGGAAGATATCTCTTTATGCGGCAAGTTCAGCTATTAAAGAAGTACAGAAACTTGTGCTTGATCCGAAACACGGTGCAGAGATAGGATATGAAGACCGAAATTTAACTGCAATGGTTTCTGAGAACTTGGAGAAAATGGTAAAACGAAGGCAGATTGCTTGTCCTTG 2789 0.4062 MDHARSASGNGEDNAGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAMRANLKKAKRKSIGESDIYLESKSDDFDVPLASMKVGEPHSGSGKKYLEKISKNQFRYTPETPTLRSASMRHAPKPNDDSPDDVPQYEENWMPYESPPASGMDSSRRRSQRSLEANVTTENSDGSTDSSEDTGGQTCHQCRRNDRDRVIWCLRCDRRGYCDSCISTWYSDNSLEEIQRSCPACRGACNCKVCLRNDNSIKVRIREIPVLDKLQYLHLLLSSVLPVVKQTHHVQCFEVELEKKLRGTDIDLPRTKLNADEQMCCNFCRIPITDYHRHCPNCSYDLCITCCRDLREANFNQKPSDQAKISNRNILSNIPDWRSNSDGSIPCPPRDYGGCGYSSLNLSRIFKMNWVAKLVKNVEEMVNGCRVSDNGDRLETKLNDLRLHQYSHREASDDNFLYCPTSEELKTDGIGNFRKHWKMGQPIIVKQVFDMSSISSWDPMVIWSGVRETADEKMKDENRMVKAIDCLDLSEIDIELGQFMKGYSEGRIHENGWPQMLKLKDWPSPSASEEFLLYQRPEFISKLPLLEYIHSKWGLLNVAAKLPHYSLQNDVGPKIYISYGISEELGKGDSVTNLHFNMRDMVYLLVHRCEVKLKGWQRTKIEKIQKAYKESDLKETSGDPPVHSGGTSPDSSLGTESDGVDLDSNEKNSTMDQSFEVYSSAETNNNCELPCGQNGDVSEKTHPGVLWDVFRRQDIPKLTEYLKMHSKEFRKPDDDISNEFVMPLCDEAVFLDRHHKRKLKEEFGVEPWSFEQNLGDAIFVPAGCPFQARNVMSAVQLGLDFLSPESLAEAVRLAEEVRCLPNEHESKLQVLEVGKISLYAASSAIKEVQKLVLDPKHGAEIGYEDRNLTAMVSENLEKMVKRRQIACP 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03306 929 MobiDBLite consensus disorder prediction 682 700 - -
Bva13g03306 929 ProSiteProfiles JmjC domain profile. 566 859 IPR003347 -
Bva13g03306 929 MobiDBLite consensus disorder prediction 161 195 - -
Bva13g03306 929 ProSiteProfiles Zinc finger RING-type profile. 196 243 IPR001841 -
Bva13g03306 929 MobiDBLite consensus disorder prediction 67 83 - -
Bva13g03306 929 MobiDBLite consensus disorder prediction 59 87 - -
Bva13g03306 929 SUPERFAMILY Clavaminate synthase-like 475 869 - -
Bva13g03306 929 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 191 257 IPR018866 -
Bva13g03306 929 MobiDBLite consensus disorder prediction 115 198 - -
Bva13g03306 929 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 10 918 IPR045109 GO:0032454|GO:0033169
Bva13g03306 929 Pfam JmjC domain, hydroxylase 745 837 IPR003347 -
Bva13g03306 929 PANTHER JMJC DOMAIN PROTEIN JMJ24 10 918 - -
Bva13g03306 929 ProSiteProfiles WRC domain profile. 17 61 IPR014977 -
Bva13g03306 929 Pfam WRC 18 58 IPR014977 -
Bva13g03306 929 MobiDBLite consensus disorder prediction 670 713 - -
Bva13g03306 929 Gene3D Cupin 452 868 - -
Bva13g03306 929 MobiDBLite consensus disorder prediction 1 22 - -
Bva13g03306 929 SMART cupin_9 573 859 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03306 Bva-Chr13 22836469 22842926 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03306 18 58 GRF Transcription Factor Family AT3G13960 46.341 3.23e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Bva13g03306 JmjC 6.9e-06 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g03306 13 22836469 22842926 Bva13g03306 13 22836469 22842926 ECH