Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03300 ATGTCTATCTTCTTCTTTCTGAAACTGAAAACATTTGGCGCGGTTGAGGCTCCGGAACGGAATCGGAACTGCAGATATACTCTAAATCTGGCACTCTCGTTATCAAGGAATGCCATGGAAGGGAAGAACATTTCTTCCGACGATGAAGTTATTGCAAAAATGCTTGACATGGGGTTTGACTATTCCAATATTGTCATAGCCCTAAGAGCAGTGGGACCTTCCATTGATAGCGCGGTGGAGTACATCTTGAATGGTGCTGGTAGAAATAGCTGTGGAGCATCCACTTCTAGCAGTTCAAAATTCTATGGTGGTAAAGCTCTTAGAAAAGGAGACTTGTGCTTATCACGTTCTTCAAGTCAAGTTCGGCAGTCTAGCATACTAGACCATTTCCAATCCAATGATAAAACTAGAGAGAGCAAGACTGGTGACGTAGTTGATGTACTATCCTCTAGTTTTGAAGTTCCTCCATGCAATGTGAAAGCGCACAAGGAGCCTTCATCTGACGTGGATTCTGATCACAATATGCAGTCCGGATTGCATATAGTAAATTctattgaagaatttgatatTGGATCAGGGTGGGAGCAGAAAGTTAGCAGTGTCTTGCAAAAGCATTTTGGTTTTTCGTCCatgaaaagttttcaaaagGAAGCCCTGAGTGCTTGGGTAGCTCATAAAGACTGTTTCGTCCTGGCCGCAACTGGATCTGGAAAATCTTTCTGCTTTCAGATTCCTGCATTATTAACCGGGAACGTGGTGGTTGTGATTTCACCTTTAATAAGTCTGATGCATGATCAATGCTTAAAGCTAGCAAGACATGGAGTTTCTGCTTGCTTTCTTGGATCTGGGCAACCAGACAATACTGTTGAACAGAAAGCCATGAGAGGAATGTATAGTATAATATATGTCTGTCCAGAGACAATTCTAAGATTGATTAAACCACTGCAGAAGCTTGCAGAAAGTCGTGGAATTGCTTTATTTGCAATTGATGAGGTACATTGTGTTTCTAAATGGGGTCACGATTTCCGGCCAGACTACAGACGACTGTCTGCACTGAGGGAAAATTTCACTACTAGTAGGCTAAAATTCCTGAAATTTGATATACCTCTGATGGCTTTGACGGCTACAGCAACAAACCGCGTTCGAGAAGACATTCTAAAGTCACTAGGCATGTCAAAAGAGACAAAGATTGTGCTCACTTCATTTTTTCGATCTAATTTACGTTTTTCGGTAAAACATAGTAGAACATCACCATCTTCTTATGAGAAAGATTTTCGTGAATTAATTCGAGTATATggcaaaaagaagaagactggtgaaaataaaaaagtatttatctcAAGGGAATCGGATGATGTGTCTGACAGCTCTGATGCTGGTGGGATCTCTGAGACAGAAAATGTTTGTCCTAGTGATTTGGATGATGACCAAGTTCATTATACCGAAGGAGATATTAGTGCAACATGCTCAAGAAACCCGGATGATTCTGTAAAGGGAAAAGAATTATCAGTAGAGTACCTGGAAAATGATATTGATATCTTTCAGAGTGTGGATGACTGGGATGTTGCTTGTGGTGAATTTTGTGTACAACCTCAAAATGTGTGGAAATTATGTGATATCGTTGATCCACCTAAAAGGCCAGAAGAAAGACTCAGACTTCGTAAAGAGCCTTTAGAACACGGACcaacaattatatatgtacCCACTCGGAAAGAAACAATGAGAATCGCAAAGTATCTATGTGATTTTGGTGTGAAGGCTGCAGCGTATAATGCAACGctGCCAAAATCACATCTAAGAAGGGTTCACAAGGAGTTTCATGAAAACACCTTAGAGGTTGTTGTTGCAACAATAGCATTTGGAATGGGGATTGACAAATCAAATGTCAGAAGAATTATCCACTATGGTTGGCCGCAGAGTTTGGAAGCCTACTACCAAGAAGCTGGTCGGGCTGGACGAGATGGTAAAATAGCAGATTGCGTTCTATATGCAAACCTGGCAAGAATCCCTTCCCTTTTGCCAAGTCATAGAAGTGAAGATCAGACCAAACAAGCATACGTCATGTTGTCTGATTGTTTCAGATATGGAATGAATACTTCATGTTGTCGAGCAAAGACGCTTGTGGAGTACTTTGGAGAGGATTTTGGTCACCAGAATTGTCTCTTATGTGATGTGTGTGTTGATGGACCACCTCAAATGCAGAATCTGAGAGAGGAGGCATGTATTTTTCTACAAGTTGTATCTGGTCATTATGGGCGTGGCTATGATTTGAATTGCTTTTATGATGGAGGAAGAAGACTAGGAGAGGGACCAAGTCTTAAGATGTTTGCTAGAAAGATAAGGGAGCAGTTTCCAAAATTTACAACCACAGATATATTATGGTGGAAAGGTCTTGCTCGAATTATGGAAGTTAAAGGTTACATCAGGGAGGGGGATGATAAAACTCATGTTCAGATTAAATACCCAGAGCCAACAGAAATGGGGTTGAAATTCCTCGAATCTGTGAACGAGCAAGCTTTCTATGTCTTCCCTGAGGCAGATATGCTGCTATCAAGCAAAACTCGCAAATCATATTCCTCCTTCTCAGAATGGGGAAAAGGCTGGGCAGATCCCGAGATTCGTCGTCAGCGCTTGGAGACAATGCGACTCAATAGAAAGCCAATGATTCCAAAAAAATACCGAAAGAGGAAAGCCAATAATAAGATTAAACCTGACCTGAGGTCCTCTCGGGGTAGACTAGCAGCCAAACTCACAAAACACAAGTG 2765 0.4022 MSIFFFLKLKTFGAVEAPERNRNCRYTLNLALSLSRNAMEGKNISSDDEVIAKMLDMGFDYSNIVIALRAVGPSIDSAVEYILNGAGRNSCGASTSSSSKFYGGKALRKGDLCLSRSSSQVRQSSILDHFQSNDKTRESKTGDVVDVLSSSFEVPPCNVKAHKEPSSDVDSDHNMQSGLHIVNSIEEFDIGSGWEQKVSSVLQKHFGFSSMKSFQKEALSAWVAHKDCFVLAATGSGKSFCFQIPALLTGNVVVVISPLISLMHDQCLKLARHGVSACFLGSGQPDNTVEQKAMRGMYSIIYVCPETILRLIKPLQKLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSALRENFTTSRLKFLKFDIPLMALTATATNRVREDILKSLGMSKETKIVLTSFFRSNLRFSVKHSRTSPSSYEKDFRELIRVYGKKKKTGENKKVFISRESDDVSDSSDAGGISETENVCPSDLDDDQVHYTEGDISATCSRNPDDSVKGKELSVEYLENDIDIFQSVDDWDVACGEFCVQPQNVWKLCDIVDPPKRPEERLRLRKEPLEHGPTIIYVPTRKETMRIAKYLCDFGVKAAAYNATLPKSHLRRVHKEFHENTLEVVVATIAFGMGIDKSNVRRIIHYGWPQSLEAYYQEAGRAGRDGKIADCVLYANLARIPSLLPSHRSEDQTKQAYVMLSDCFRYGMNTSCCRAKTLVEYFGEDFGHQNCLLCDVCVDGPPQMQNLREEACIFLQVVSGHYGRGYDLNCFYDGGRRLGEGPSLKMFARKIREQFPKFTTTDILWWKGLARIMEVKGYIREGDDKTHVQIKYPEPTEMGLKFLESVNEQAFYVFPEADMLLSSKTRKSYSSFSEWGKGWADPEIRRQRLETMRLNRKPMIPKKYRKRKANNKIKPDLRSSRGRLAAKLTKHK 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03300 921 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE SIM 45 900 - -
Bva13g03300 921 MobiDBLite consensus disorder prediction 894 921 - -
Bva13g03300 921 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 251 665 IPR027417 -
Bva13g03300 921 Gene3D - 539 663 IPR027417 -
Bva13g03300 921 MobiDBLite consensus disorder prediction 449 474 - -
Bva13g03300 921 CDD UBA1_NUB1_like 47 82 - -
Bva13g03300 921 Gene3D - 170 403 IPR027417 -
Bva13g03300 921 CDD DEXHc_RecQ 200 402 - -
Bva13g03300 921 Pfam RecQ zinc-binding 671 726 IPR032284 -
Bva13g03300 921 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 45 85 IPR015940 -
Bva13g03300 921 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 219 395 IPR014001 -
Bva13g03300 921 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 539 693 IPR001650 -
Bva13g03300 921 SMART ultradead3 207 412 IPR014001 -
Bva13g03300 921 Gene3D - 31 90 - -
Bva13g03300 921 SMART uba_6 47 84 IPR015940 -
Bva13g03300 921 SMART helicmild6 574 655 IPR001650 -
Bva13g03300 921 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 200 437 IPR004589 GO:0004386|GO:0006310
Bva13g03300 921 SUPERFAMILY UBA-like 42 87 IPR009060 GO:0005515
Bva13g03300 921 Pfam Helicase conserved C-terminal domain 555 654 IPR001650 -
Bva13g03300 921 Gene3D - 667 841 IPR036388 -
Bva13g03300 921 PANTHER DNA HELICASE RECQ FAMILY MEMBER 45 900 - -
Bva13g03300 921 Pfam DEAD/DEAH box helicase 214 381 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03300 Bva-Chr13 22807176 22814280 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03300 556 655 Eukaryotic Initiation Factors Gene Family AT5G11170 27.000 3.25e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03300 K10900 - gmx:100793222 1135.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g03300 13 22807176 22814280 Bva13g03300 13 22807176 22814280 ECH