LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva13g03285	ATGAGTGGCCGGTCAAGTCGCACTATCTATGTTGGCAATCTCCCTGGCGATATTCGCTTGAGAGAAGTGGAAGATCTGTTCTACAagTATGGTCCAATTGTTGATATCGATTTGAAAATCCCTCCTAGACCACCTGGTTATGCATTTGTGGAGTTTGAGGATCCTCGTGATGCTGAAGATGCAATTGGATATCGAGATGGATATAATTTTGATGGTTTTCAATTACGAGTTGAACTTGCACATGGTGGGCGGGGATATTCATCATCAACAGACCGCTATAGTAGATAtagtggtggtggtggaagCCGTGGACCTCCCCGGCGTTCGGACTATCGTgTTCTGGTCACTGGATTACCCCCTTCAGCTTCATGGCAAGACCTAAAGGATCACATGCGTAAAGCTGGTGATGTGCGTTTCTCTCAAGTCTTCCGTGAGCGTGGTGGCATGATGGGGATTGTTGATTATACCAATTATGAGGATATGAAATATGCTATCAGGAAACTGGATGACTCAGAATTTCGGAATGCCTTTTCTCGGGCATATATACGGGTACGGGAGTATGATGGACAGAGTTATTCTAGGAGTCCTAGTTATGATTCAAGGAGGAGCTATTCTAGGAGTTGTAGCCGCAGTCCATATATGTTGCGTGGTAGAAGTTGCAGTCAAAGCCGTAGCTATACTGACAGGAGCAGAAGTTACTCTCCAAAGGCAAAACGCTCACGACCTTCATTATCCCCCTCAAggtcaATTGGCTTTTTTCGGCAACCTGGGGACTGCATGTTAGGATCTTTGATGGCATGTGGTGCTCAAACGCCTGCAACTTTGTGGTCGAGGAATGGTGTGCCATTGGTTAATACTGATGACTGTGGATGGATGAGTTGCAATCTAAAAGCTGGATCATCATCCCGATCGAGATCCTGTTCTCCAAATTTATCTCCACTGACTCGCAGAAGTCGCAGTCCTAGCCGAACTCCGACAAGCGTATCCCGATCCCGTTCGCCTTCAGCCAGCAGATCTGATTCTGGAGATCGTTATTG	1037	0.4523	MSGRSSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDAEDAIGYRDGYNFDGFQLRVELAHGGRGYSSSTDRYSRYSGGGGSRGPPRRSDYRVLVTGLPPSASWQDLKDHMRKAGDVRFSQVFRERGGMMGIVDYTNYEDMKYAIRKLDDSEFRNAFSRAYIRVREYDGQSYSRSPSYDSRRSYSRSCSRSPYMLRGRSCSQSRSYTDRSRSYSPKAKRSRPSLSPSRSIGFFRQPGDCMLGSLMACGAQTPATLWSRNGVPLVNTDDCGWMSCNLKAGSSSRSRSCSPNLSPLTRRSRSPSRTPTSVSRSRSPSASRSDSGDRY	345

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva13g03285	345	MobiDBLite	consensus disorder prediction	215	230	-	-
	Bva13g03285	345	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	111	189	IPR000504	GO:0003723
	Bva13g03285	345	Gene3D	-	111	188	IPR012677	-
	Bva13g03285	345	PANTHER	SERINE/ARGININE RICH SPLICING FACTOR	3	251	-	-
	Bva13g03285	345	MobiDBLite	consensus disorder prediction	215	249	-	-
	Bva13g03285	345	MobiDBLite	consensus disorder prediction	298	336	-	-
	Bva13g03285	345	CDD	RRM1_SF2_plant_like	8	79	-	-
	Bva13g03285	345	MobiDBLite	consensus disorder prediction	83	109	-	-
	Bva13g03285	345	MobiDBLite	consensus disorder prediction	191	210	-	-
	Bva13g03285	345	SMART	rrm1_1	8	78	IPR000504	GO:0003723
	Bva13g03285	345	SMART	rrm1_1	112	181	IPR000504	GO:0003723
	Bva13g03285	345	SUPERFAMILY	RNA-binding domain, RBD	5	177	IPR035979	GO:0003676
	Bva13g03285	345	CDD	RRM2_SF2_plant_like	111	186	-	-
	Bva13g03285	345	Gene3D	-	2	110	IPR012677	-
	Bva13g03285	345	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	7	82	IPR000504	GO:0003723
	Bva13g03285	345	PANTHER	PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN	3	251	-	-
	Bva13g03285	345	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	113	175	IPR000504	GO:0003723
	Bva13g03285	345	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	9	75	IPR000504	GO:0003723
	Bva13g03285	345	MobiDBLite	consensus disorder prediction	298	345	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva13g03285	Bva-Chr13	22731843	22737053	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva13g03285	1	169	Eukaryotic Initiation Factors Gene Family	AT1G71770	24.713	6.14e-06	46.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva13g03285	K12890		-	gmx:100794282	355.525