Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03274 ATGGCCttagttaatttctttttgcttctcATCCTTTTACCTTCATTTGAGGCTCTCTCAGATGAATTTCCCTTTGACATGAAAACCCAAGACATGCATGCCTTGATTGCACAAGCATGCATGGACgttgaaaatcaaaactcaTGCCTCAACAACATCCAAAATGAGCTTCACAAAATTGGCCCTCCAAGTCCTACTTCTGTTGTAACTGCTGCACTGAGGACCACGCTTGGCGAAGCCAGAAATGCTATTGAAAATATCACAAAGTTCACTACTTTCTCTGTCAGCTATCGTGAACAAGTAGCGATAGAAGATTGCAAGGAACTGCTAGATTTCTCAGTCAATGAGTTGGCCTGGTCCTTAGCAGAGATGAAGAGAATTCGAGGAGGTGATAACAATGCCCAGTATGAAGGAAATCTTGAAGCTTGGCTAAGCGCAGCGCTGAGTAACCAAGACACGTGCCTTGAAGGGTTCGAGGGCACCGACAGGCGTCTTGAGAGTTACATCAGTGGAAGCTTGACGCAAGTGACGCAACTTATCAGCAATGTGTTGGCTCTGTATACTCAGTTACACAACTTACCCTTCAGACCTCCCAGAAATACAAGTCTCATcacaaatgaagaaagctcAGAGTTTCCGGAGTGGGTGACTGATGGTGATCAAGAGCTCCTGAAATCCGGAACACAAGGTCCAATGCATGCAAATGCGGTTGTGGCATTGGATGGAAGCGGCCATTATCGCACAATCAATGAAGCCGTGAATGCAGCTCCAAGCCATAGTACCAGGAggtatgttatatatataaagcaggGACTGTATAAGGAGAACATTGacatgaaaaggaagaaaaccaACATCGTGTTCATAGGAGATGGCATTGGCAAAACCATTATCCAATCCAACCGGAATTTCATGCAAGGATGGACTACTTTTCGAACTGCCACACTTGCTGTGTCTGGGAAGGGATTCATAGCGAGGGACATGTCAATTCGCAACACGGCTGGGCCAGAAAACCATCAAGCAGTGGCACTGCGTGTGGATTCAGACCAATCTGCGTTCTACAGGGTCAGTGTGGAAGGCCACCAGGACACCCTTTATGCTCATTCACTGCGACAATTCTATAGGGAATGTGAAATCTATGGCACGATAGACTTCATTTTCGGCAATGGTGCTGCTGTGCTGCAGAATTGCAAGATATATACCAGAGTGCCACTTCCATTGCAGAAGGTGACCATCACAGCACAGGGCAGGAAAAGCCCACATCAGAGCACTGGCTTTACGATTCAGGATAGCTATGTGCTTGCAACCCAACCTACCTATTTGGGAAGGCCTTGGAAGCAATACTCGAGGACAATATATATGAACACTTACATGAGTGGCCTGGTCCAACCCAGAGGCTGGCTCGAGTGGTTCGGTGACTTTGCCTTGAACACATTGTGGTATGGTGAGTATCGAAATTATGGCCCTGGTGCATCACTCGCCGGAAGGGTCAAATGGCCGGGTTATCACATCATTCGAGATGCAGCCGCGGCTGATTTCTTCACCGTTCAGCACTTCATTGATGGTGGATCATGGTTGCCGGCAACAGGTGTCAAGTTCACGGCTGGCCTGAgcaatta 1619 0.4478 MALVNFFLLLILLPSFEALSDEFPFDMKTQDMHALIAQACMDVENQNSCLNNIQNELHKIGPPSPTSVVTAALRTTLGEARNAIENITKFTTFSVSYREQVAIEDCKELLDFSVNELAWSLAEMKRIRGGDNNAQYEGNLEAWLSAALSNQDTCLEGFEGTDRRLESYISGSLTQVTQLISNVLALYTQLHNLPFRPPRNTSLITNEESSEFPEWVTDGDQELLKSGTQGPMHANAVVALDGSGHYRTINEAVNAAPSHSTRRYVIYIKQGLYKENIDMKRKKTNIVFIGDGIGKTIIQSNRNFMQGWTTFRTATLAVSGKGFIARDMSIRNTAGPENHQAVALRVDSDQSAFYRVSVEGHQDTLYAHSLRQFYRECEIYGTIDFIFGNGAAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQSTGFTIQDSYVLATQPTYLGRPWKQYSRTIYMNTYMSGLVQPRGWLEWFGDFALNTLWYGEYRNYGPGASLAGRVKWPGYHIIRDAAAADFFTVQHFIDGGSWLPATGVKFTAGLSN 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03274 539 Gene3D Invertase/pectin methylesterase inhibitor family protein 32 191 IPR035513 -
Bva13g03274 539 ProSitePatterns Pectinesterase signature 2. 379 388 IPR033131 -
Bva13g03274 539 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 191 IPR035513 -
Bva13g03274 539 SMART PMEI_2 31 186 IPR006501 GO:0004857
Bva13g03274 539 SUPERFAMILY Pectin lyase-like 232 536 IPR011050 -
Bva13g03274 539 Pfam Pectinesterase 235 522 IPR000070 GO:0030599|GO:0042545
Bva13g03274 539 PANTHER PECTINESTERASE 7 537 - -
Bva13g03274 539 CDD PMEI-like_4 48 190 - -
Bva13g03274 539 Pfam Plant invertase/pectin methylesterase inhibitor 35 186 IPR006501 GO:0004857
Bva13g03274 539 Gene3D - 230 537 IPR012334 -
Bva13g03274 539 TIGRFAM PME_inhib: pectinesterase inhibitor domain 4 191 IPR006501 GO:0004857
Bva13g03274 539 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 22-RELATED 7 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03274 Bva-Chr13 22689529 22691484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03274 8 539 Carbohydrate Esterase AT3G05620 64.338 0.0 711
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03274 K01051 - gmx:100810565 917.916