Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03261 ATGGTAAGGGGAGGAAAAGTTAGTAGAGAACGCAATTGCAGGGGAAGGGTTCGGTCAAAGGGGAAGGGTTCGGATGATTCGGATGAGGACTATGTAGTTTCAGATGACGATAGATATGTGTCTGATGGTTCAGAGGATTATTGTTCTTCTTTAGATGAATGTGCATCAGAGGAGAGTTTTAATAGTTTTGTAGATGTAGAGGTGGAGGACGAggaggaagaaattgaaggattaaggaaaattaatagattgaagacaaaaaatgGTTTTCGTGATCAGCAGAAAGGGGGAGGTAAAACACCtaaaaagaggagaaagaCTACATATGCACAACAACTTGATGATGAGGAAGAAGACGGAGTAAATGAGGACGAGGACCAGTATGAAGAGGAAGACGATGAGGATTTTGactttgatgatgatgaggaaTTTACgccagaggaagaagaggattcagatgaggaagaagaaataagggggagaaagaagagaaataacaGCATGAAAATGGGCAAGAAAGCATTGCAGAAAAGAGTATCTGTGACTTCTACCAGAGGTCGAAAGAGGAGGAGAAGAAGTTCTAGAGTTGCAAGGGAGCCcttgaaaaatagaagaaagaatgcAGGGTTGAGGAGGAAAGTAAGATGTAACGATGAGGATGATTTTATAGATGAAGGCTCAGCTGTCAGGACGAAGAGTAAGAAAAAGCCAGTCCTAAAAAAGCGAAGACTTTCAGATTCAGATTCGGACTGTGTGTTTTCATCTGATTACGAGTTTACCATCTcggaggaagagagagaacagGTGAGAGAAGCTGAAGAATTGTGTGTAAGTTTGAGGCCTAACTTGAGGAGTTCATTGTTTACGatgaaaaatgaagatgatggTGTTCAGGAAGACCTACATCGACAAAGGAAGCCTCCAGGTCGGAAGGGtaaggaaaagatagaagaaGCTCAAGGAAAAAAGGGTAAGGAAAAGGTTGAGGATTTAAAAAGTGAGGTGGTCAAGCAAGTCTGCGGTATTTGTCTATCAGAGGAAGATAGAAGAAGAGTAAGGGGAGTACTAAATTGCTGCACccactttttttgttttgcttgcATTATGGAGTGGTCGAAGGTGGAAACTCGCTGTCCTTTGTGTAAGCAGAGATTCACAACAATTAGTAAGCCTGGACGACAAACACCTGGGGTTGATTTGAGAGAAGTGGTAATACAAGTACCCGAGCGTGACCAGGTTTATCAGCCTTCCGAGGAAGAACTCAGGAGCTATATTGATCCATATGAATCTGTGATTTGTTCAGAGTGCCATCAAGGCGGAGATGATGCCCTCATGTTGCTGTGTGATCTATGCGATTCTCCTGCACACACATATTGTGTTGGTCTTGGGCGGGTAGTCCCTGAAGGCAATTGGTATTGTGATGGTTGTAGACCAGTTGCTTTGGGATCTTCAAGTTCCCAAGTTCAAGAACATGTGTCTGATCCAAGGGTTACACTCCAGAGCTTGCCTTGTAGACCATCGCATGCGTTACATGTACGAGAAAGCATAGATCTTAACTTGATATCCTCACCCCGTTCATCTTTTAATCAAGTGCTTGGGAATCTTTCGGCTTCTAGGTTCTCTGGTAGAAGTTTGGAAGGAGTTTCTCCACTGTCTGGAGGAGGGGTACCAACTTTAACAGGGAGACGCTGGATACAACGTCAAATTCAACAGCTTCTTTCAATGGATAGAATTAATTCTAGAATTGGCAGAATTAATGGTATCTCAGCTACCAGTTCAAATATTAACTTGCACAGCTCTCAAATTGATCAGAGTACGGAAACAGCCACTCAACATACAAGGATGCAGGATGTGGGAACATCATACCACACATTCCTTGAAGATAGATTATGCAATGACTCCTCTCCGTTAATTCAGAATGGTGATGTCTTATCCATGAGAATAAGCAATTCAAGAAGGACACCTGTTCAAGATTCAACTACATTTACTGACAGAACAGTGAATGGGACATTATGGCCTGGCCTTTTGGGAACACCCCCACCCCAAGTATCAGATTATGAACAAGTCCATCAGTTGAGCAGCAGATCAAATACTGTTACTGATGGTAGCATTTCCCCTGCTGTTAAAGAAGAGAGTCGCATTGCAAAGGAACAGTTACGGTCAATGGTTAAAAGCCACCTGAATTGCTTGTCACGAGATATTTGTTTAAGCAGCACTACCTTTAAGGACATTGTAAGGAGTTGTACGCACACCATACTAGCAGCGTGCGGTTTTGAGCACAAGAAGAGTGAGGTTTGCTCTGTGCCGCCACTATCCGTCTGTTCCCACATTCAAGTAATGACTGTTGGAACAACGAGTCTGCTTCAAGGCTGCTGCTCATCTtgctttgattcttttttagtAGAAGTGGTGAAGAGGATAATGGACACAAAATTGTCATCAGGATGGTTAAGATTAGGTCTTTA 2465 0.3862 MVRGGKVSRERNCRGRVRSKGKGSDDSDEDYVVSDDDRYVSDGSEDYCSSLDECASEESFNSFVDVEVEDEEEEIEGLRKINRLKTKNGFRDQQKGGGKTPKKRRKTTYAQQLDDEEEDGVNEDEDQYEEEDDEDFDFDDDEEFTPEEEEDSDEEEEIRGRKKRNNSMKMGKKALQKRVSVTSTRGRKRRRRSSRVAREPLKNRRKNAGLRRKVRCNDEDDFIDEGSAVRTKSKKKPVLKKRRLSDSDSDCVFSSDYEFTISEEEREQVREAEELCVSLRPNLRSSLFTMKNEDDGVQEDLHRQRKPPGRKGKEKIEEAQGKKGKEKVEDLKSEVVKQVCGICLSEEDRRRVRGVLNCCTHFFCFACIMEWSKVETRCPLCKQRFTTISKPGRQTPGVDLREVVIQVPERDQVYQPSEEELRSYIDPYESVICSECHQGGDDALMLLCDLCDSPAHTYCVGLGRVVPEGNWYCDGCRPVALGSSSSQVQEHVSDPRVTLQSLPCRPSHALHVRESIDLNLISSPRSSFNQVLGNLSASRFSGRSLEGVSPLSGGGVPTLTGRRWIQRQIQQLLSMDRINSRIGRINGISATSSNINLHSSQIDQSTETATQHTRMQDVGTSYHTFLEDRLCNDSSPLIQNGDVLSMRISNSRRTPVQDSTTFTDRTVNGTLWPGLLGTPPPQVSDYEQVHQLSSRSNTVTDGSISPAVKEESRIAKEQLRSMVKSHLNCLSRDICLSSTTFKDIVRSCTHTILAACGFEHKKSEVCSVPPLSVCSHIQVMTVGTTSLLQGCCSSCFDSFLVEVVKRIMDTKLSSGWLRLGL 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03261 821 MobiDBLite consensus disorder prediction 182 211 - -
Bva13g03261 821 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 409 484 IPR013083 -
Bva13g03261 821 MobiDBLite consensus disorder prediction 293 324 - -
Bva13g03261 821 ProSiteProfiles Zinc finger RING-type profile. 340 382 IPR001841 -
Bva13g03261 821 SMART ring_2 340 381 IPR001841 -
Bva13g03261 821 MobiDBLite consensus disorder prediction 290 324 - -
Bva13g03261 821 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 315 397 IPR013083 -
Bva13g03261 821 Coils Coil 68 88 - -
Bva13g03261 821 PANTHER F18C1.6 PROTEIN 1 810 - -
Bva13g03261 821 MobiDBLite consensus disorder prediction 1 43 - -
Bva13g03261 821 Pfam PHD-finger 432 478 IPR019787 -
Bva13g03261 821 ProSitePatterns Zinc finger RING-type signature. 359 368 IPR017907 -
Bva13g03261 821 ProSiteProfiles Zinc finger PHD-type profile. 430 479 IPR019787 -
Bva13g03261 821 SUPERFAMILY FYVE/PHD zinc finger 401 478 IPR011011 -
Bva13g03261 821 SUPERFAMILY RING/U-box 339 388 - -
Bva13g03261 821 Pfam Ring finger domain 339 382 IPR001841 -
Bva13g03261 821 MobiDBLite consensus disorder prediction 1 45 - -
Bva13g03261 821 MobiDBLite consensus disorder prediction 65 211 - -
Bva13g03261 821 CDD RING-HC_Topors 340 382 - -
Bva13g03261 821 PANTHER F18C1.6 PROTEIN 1 810 - -
Bva13g03261 821 SMART PHD_3 432 477 IPR001965 -
Bva13g03261 821 MobiDBLite consensus disorder prediction 114 155 - -
Bva13g03261 821 MobiDBLite consensus disorder prediction 75 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03261 Bva-Chr13 22625937 22629354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03261 427 476 C2H2 Transcription Factor Family AT3G01460 43.137 1.80e-08 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bva13g03261 PHD 2.9e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03261 - - gmx:100797448 852.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g03261 13 22625937 22629354 Bva13g03261 13 22625937 22629354 ECH