Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03259 ATGGCGTCAAGGAACCGCACTCTGCTGTATAGAAAGTACAGAGATGCCTTGAAGAGTGTTCGGGCTCCCTCTAGCTCTTCGGCCTCCACCACTTCCACCGGTGCTGGTGGCCCCGTCATCGAATTGGTCAGCACATCACTTCTAAATCCCAATCGCTCTTACACTCCGCTTAGTACCGAGGATCCTGGCAATTCAAGTAAGGGTCCACTCACTGTGGGACTACCTCCAGCATGGGTGGATTATTCCGAAGAAATATCGGCAAACGTGCAACGTGCACGCACCAAAATGGCAGAGCTAGCCAAGGCTCATGCAAAGGCTTTAATGCCATCATTTGGAGATGGTAAAGAAGATCAACGTGTGATTGAGAATCTCACACATGAGATCACCGATTTAATAAAGAGATCAGAAAAGAGATTGCAAAAACTTTCTGCTGCTGGACCTTCTGAGGATtcaaatttgaggaaaaatGTGCAGCGTTCTCTTGCTACCGACCTTCAGAACCTCTCTGTAGAGCTCCGAAAGAAACAATCAACTTATCTGAAGCGCCTTAGGCAGCAAAAAGAGAGTCAAGATGGAGATGATTTAGAGATGAACATAAATGGAAGTAAACCCAGATTTGAAGATGATGACTTAGACAATATGGTATTTAATGAGCATCAGATGGCCAAGCTGAAAAAAAGTGAAGCATTcacagaagaaagagaaaaagagatccAACAGGTTGTGGAATCTGTAAACGAGCTTGCTCAAATTATGAAAGATTTATCAGTACTAGTGATAGATCAGGGAACCATAGTTGATAGAATAGACTACAACATTCAAAACGTGGCAACTACAGTTGAGGACGGCCTCAAACAGTTGCAGAAGGCAgagaaatcacaaaaacaagGGGGAATGGTAATGTGCGCTACGGTGCTTGTTATCATGTGCTTAATAATGTTGGTTCTCCTAATCCTTAAGGAGATCTTGTG 971 0.4161 MASRNRTLLYRKYRDALKSVRAPSSSSASTTSTGAGGPVIELVSTSLLNPNRSYTPLSTEDPGNSSKGPLTVGLPPAWVDYSEEISANVQRARTKMAELAKAHAKALMPSFGDGKEDQRVIENLTHEITDLIKRSEKRLQKLSAAGPSEDSNLRKNVQRSLATDLQNLSVELRKKQSTYLKRLRQQKESQDGDDLEMNINGSKPRFEDDDLDNMVFNEHQMAKLKKSEAFTEEREKEIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVEDGLKQLQKAEKSQKQGGMVMCATVLVIMCLIMLVLLILKEIL 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03259 323 SMART tSNARE_6 223 290 IPR000727 -
Bva13g03259 323 CDD SNARE_syntaxin16 232 289 - -
Bva13g03259 323 MobiDBLite consensus disorder prediction 183 210 - -
Bva13g03259 323 PANTHER SYNTAXIN 1 319 IPR045242 -
Bva13g03259 323 SUPERFAMILY t-snare proteins 74 283 IPR010989 GO:0016020|GO:0016192
Bva13g03259 323 MobiDBLite consensus disorder prediction 50 71 - -
Bva13g03259 323 MobiDBLite consensus disorder prediction 50 66 - -
Bva13g03259 323 Gene3D - 75 282 - -
Bva13g03259 323 SMART SynN_4 69 184 IPR006011 GO:0016020
Bva13g03259 323 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 228 290 IPR000727 -
Bva13g03259 323 PANTHER TARGET SNARE COILED-COIL-LIKE DOMAIN-CONTAINING PROTEIN-RELATED 1 319 - -
Bva13g03259 323 ProSitePatterns Syntaxin / epimorphin family signature. 234 273 IPR006012 GO:0005484|GO:0006886|GO:0016020
Bva13g03259 323 Coils Coil 82 102 - -
Bva13g03259 323 Pfam SNARE domain 264 316 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03259 Bva-Chr13 22618323 22622054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03259 1 323 SNARE and Associated Proteins AT5G26980 77.778 0.0 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03259 K08489 - jre:109011309 511.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g03259 13 22618323 22622054 Bva04g03254 04 26338256 26342338 ECH
Bva13g03259 13 22618323 22622054 Bva13g03259 13 22618323 22622054 ECH