Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03257 ATGGTCATGATGGATTTCAAGGACAAGGAATCATCGCCTGGGGAATTGAGTGAGAACAAGAAATGCTGCACTGATTGCAAAACCACCAAGACTCCACTCTGGAGGGTAGGACCAGCTGGGCCAAAGAGCCTGTGCAACGCTTGCGGGATTAGATACCGAAAACAAAGGACTAGTGCGGTGGGATTGAAGAaaggacaagaaagaaaaagagagaaagggagaaaTCGCTGTGCGAGCGGCAGCCCCAGTAGAAGGAGCACCAGCGCTGGCTCTGGCAAAACGGTTAGTATCGGTGGCAGCGACTTGAGAACGAAGTTAATGGCATTGGGTGATGAGGTGTTGTTGCAGCGCCCATCCTCTGTTGTGATGAAGAAACACAAGAGGAGGGGCAATTTAGGGGAGGAGGAACAAGCCGCTTTTTGCTTGATGGCACTCTCTTGCGGTTTTGTTTTCGCTTG 458 0.4782 MVMMDFKDKESSPGELSENKKCCTDCKTTKTPLWRVGPAGPKSLCNACGIRYRKQRTSAVGLKKGQERKREKGRNRCASGSPSRRSTSAGSGKTVSIGGSDLRTKLMALGDEVLLQRPSSVVMKKHKRRGNLGEEEQAAFCLMALSCGFVFA 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03257 152 MobiDBLite consensus disorder prediction 59 99 - -
Bva13g03257 152 PANTHER GATA TRANSCRIPTION FACTOR 16 9 152 - -
Bva13g03257 152 PANTHER OS01G0976800 PROTEIN 9 152 - -
Bva13g03257 152 SMART GATA_3 17 75 IPR000679 GO:0006355|GO:0043565
Bva13g03257 152 CDD ZnF_GATA 23 74 IPR000679 GO:0006355|GO:0043565
Bva13g03257 152 Gene3D - 18 80 IPR013088 GO:0006355|GO:0008270
Bva13g03257 152 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 20 57 - -
Bva13g03257 152 MobiDBLite consensus disorder prediction 79 98 - -
Bva13g03257 152 Pfam GATA zinc finger 23 57 IPR000679 GO:0006355|GO:0043565
Bva13g03257 152 ProSiteProfiles GATA-type zinc finger domain profile. 17 53 IPR000679 GO:0006355|GO:0043565
Bva13g03257 152 MobiDBLite consensus disorder prediction 60 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03257 Bva-Chr13 22610473 22612828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03257 16 152 C2C2-Gata Transcription Factor Family AT3G06740 44.203 3.31e-29 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Bva13g03257 GATA 2.1e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03257 - - lang:109330084 157.532
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01312 05 6906724 6907971 Bva13g03257 13 22610473 22612828 ECH
Bva13g03257 13 22610473 22612828 Bva13g03257 13 22610473 22612828 ECH