Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03248 ATGAGGATGAAGGAGCACGATCTGGAGTTAGAGAAAACTCGCTTAGTGAGCTTGGCCCTTGATTTTGGCTTTGATGAAGATTCCGCCAAGAAATGCTTGGATCGTCTTGTTGCTCTTTATGGCGATGATGGCCGTGATTTTATCACTGTGGAGCACTGTGGTGATGATTTTCTGGCCGCTTTAGCCGATTCAATGCAAGATACTGAGGAATGGGATGATCTACAGGCAATTGAATCAGAAGCTTGTGGAACTTTGACTGATATGTTTGACAGAAATGCTGTCAGCTTTAGTGATCCATGTGATGACGTTTCAAAAAGctgtattaatattattgagGATTCTCCTGAACCTCTAAAACACCAGAATGTAGTGGAGGTCGATTCCAGTGACAATGAAGACGAGGACTTTAGTATTCAGAAGAGAGAATCTGTGGTAAGTGAAGACGAGGACTTTAGTATTCAGAAGAGAGAATCTGTGGATTGTGGAAGTAGCATTACTCAGGGCTCAGTTTCTTTACTGTCCAGCAAAAGACAATGCTCCTTGACATCAAAGGATGAAAACAGGACTCTCACATACGACGAACTACAAGCTCTGGATGATATTGAATTGGCAAATGTTGTTATATTTGGTAACAGGACATTTCGACCATTGCAGCATCAAGCATGTAAAGTAGCTTTAGCAAAACAAGATTGTTTTATCCTTATGCCTACTGGAGGTGGTAAATCTCTATGTTATCAGCTTCCAGCAACTCTTCGACCAGGTGTTACAGTAGTAGTATCCCCCTTACTTTCACTCATTCAGGATCAGATTGTTACGTTGAACCTCAAGTTTGGAATTCCCGCTACTTTTCTAAATTCGCAACAAACGTCTTTGCAAGCGGCAGCAGTCCTTAAAGAACTAAGAAAAGACAAACCATCATGCAAGCTCTTATATGTGACACCAGAAAGAATTGCTGGCAACCcatcatttcttcaaattctaaaatacATGCATCAGAAGGGTCAGCTAGGAGGTTTTGTGGTTGATGAGGCACACTGTGTTAGCCAATGGGGACATGATTTTCGACCTGATTATCGGGGATTAGGATGTCTTAAGCAGAACTTTCCAGATGTACCTGTCATGGCATTGACTGCTACAGCAACGCACTCAGTTCGTGAGGACATCTTAAATGCTTTAAGAATCCCCCATGCACTTGTTCTTGAAAGAAGCTTTGACAGACCGAACTTGAAGTATGAAGTGAATGTTAAGACAAAGGACTCAATGAAGCAGCTTGGACAACTAATAATGGATCGTTTCAGGAATCAGTGTGGAATCGTATACTGCCTTTCTAAAAGTGAATGTGTCGAGGTCTCAACATTTTTGAACGAGAAATGTAAGATTAAGACAGTATATTATCATGCTGGCTTGGCAATCCGTCAGAGAGTTGCTGTCCAAAAACAGTGGCACGAGGGAGAGGTCCATATAGTATGTGCAACTATTGCTTTTGGAATGGGAATAGACAAACCTGATGTTCGCTTTGTCATCCACAATACATTgtcaaaatcaattgaaagCTATTATCAAGAATCAGGAAGGGCTGGAAGAGATAATCTTCCCGCAGTTTGCATTGCTTTATACCAGAAAAAGGATTTTAGTCGCGTTGTATGCATGTTAAGAAATGGCCAAGGACACAAAAGGGAAAGTTTTAAGACAGCGATGGCTCAAGCCCAAAAGATGCAACAATATTGTGAACTTAAGGTTGAATGCCGAAGACAAACTTTGCTTGAACACTTTGGAGAATCTTTTGACAGAAAAGCCTGCAAGCATGGATCTAACCCCTGTGATAATTGTGTCAAGAGTGCATCATG 1847 0.4028 MRMKEHDLELEKTRLVSLALDFGFDEDSAKKCLDRLVALYGDDGRDFITVEHCGDDFLAALADSMQDTEEWDDLQAIESEACGTLTDMFDRNAVSFSDPCDDVSKSCINIIEDSPEPLKHQNVVEVDSSDNEDEDFSIQKRESVVSEDEDFSIQKRESVDCGSSITQGSVSLLSSKRQCSLTSKDENRTLTYDELQALDDIELANVVIFGNRTFRPLQHQACKVALAKQDCFILMPTGGGKSLCYQLPATLRPGVTVVVSPLLSLIQDQIVTLNLKFGIPATFLNSQQTSLQAAAVLKELRKDKPSCKLLYVTPERIAGNPSFLQILKYMHQKGQLGGFVVDEAHCVSQWGHDFRPDYRGLGCLKQNFPDVPVMALTATATHSVREDILNALRIPHALVLERSFDRPNLKYEVNVKTKDSMKQLGQLIMDRFRNQCGIVYCLSKSECVEVSTFLNEKCKIKTVYYHAGLAIRQRVAVQKQWHEGEVHIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPAVCIALYQKKDFSRVVCMLRNGQGHKRESFKTAMAQAQKMQQYCELKVECRRQTLLEHFGESFDRKACKHGSNPCDNCVKSAS 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03248 615 Pfam RecQ zinc-binding 542 610 IPR032284 -
Bva13g03248 615 PANTHER DNA HELICASE RECQ FAMILY MEMBER 28 612 - -
Bva13g03248 615 CDD DEXHc_RecQ 208 405 - -
Bva13g03248 615 CDD SF2_C_RecQ 406 539 - -
Bva13g03248 615 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 222 398 IPR014001 -
Bva13g03248 615 Pfam Helicase conserved C-terminal domain 423 529 IPR001650 -
Bva13g03248 615 Pfam DEAD/DEAH box helicase 216 384 IPR011545 GO:0003676|GO:0005524
Bva13g03248 615 PANTHER BLOOM SYNDROME PROTEIN 28 612 - -
Bva13g03248 615 SMART helicmild6 448 530 IPR001650 -
Bva13g03248 615 Gene3D - 406 614 IPR027417 -
Bva13g03248 615 Gene3D - 173 405 IPR027417 -
Bva13g03248 615 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 208 613 IPR004589 GO:0004386|GO:0006310
Bva13g03248 615 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 253 550 IPR027417 -
Bva13g03248 615 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 423 570 IPR001650 -
Bva13g03248 615 SMART ultradead3 210 414 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03248 Bva-Chr13 22569160 22573426 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03248 281 548 Eukaryotic Initiation Factors Gene Family AT5G11170 23.214 1.86e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03248 K10899 - qsu:112003918 977.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g03248 13 22569160 22573426 Bva13g03248 13 22569160 22573426 ECH