Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03235 ATGGAAGATTTTTACAGGTTAAACCCTCTTGTACCCTACCCAGATGATGTTGTTAGGGTTGGCAACGTTTCTGCGGCTGCTGCTACTCAATTGCACCATGAACCGGTGGCCAATAACTATTTACAACTCGAACCGGACGGAAGCGGGTCAGATATGTCGGATCCGCTGATCAAGACCCAGATCGCCAATCATCCTCTTTATCCAAATTTAGTATCTGCATACATAGAATGCCAAAAGGTTGGAGCTCCCTCAGAACTGGCGTCTCTTCTTGACGAAATAGGCCTGGGAAGCCATCCCACCAATGCTTGCAGTGTGATAGGGGACGATCCTGAGCTTGACGAGTTCATGGAATCGTACTGCGATGTTCTTCATAGATACAAGGAGGAGCTGTCCAAGCCGTTCAACGATGCGATTTCGTTTTTGAACAATATGCAATCCGAACTAAGCAACCTTTGTAAGGGAACATTAACAAAGTCATCGGACTGTCGATCAGGGTTGACGTCAGATGAGGAACTAAGTTGTGGGGAGGCAGAAACACTTGAAAGTCGCGAGCTAAAAGAAATGCTCCGTCGTAAGTACAGTGGCTATCTCGGCAGTTTAAGGAAGGAATTcttaaagaaaaggaaaaagggtaAACTACCAAAGGATGCAAGGATGGCGCTACTCGATTGTTGGAACACCCACTACCGATGGCCATATCCTACGgaagaggaaaaaaggaaGCTTTCGGAGATAACTGGACTAGATCAAAAGCAAATCAATAATTGGTTCATCAATCAGAGGAAACGGCATTGGAAACCTTCTGAAGATATGAAATTTGCTGGCATGGAGGGTGTAGGAGAGCCCGTGTACTATGATTCTGATGGTGGACCTCAATTTGGCGATATCTG 890 0.4416 MEDFYRLNPLVPYPDDVVRVGNVSAAAATQLHHEPVANNYLQLEPDGSGSDMSDPLIKTQIANHPLYPNLVSAYIECQKVGAPSELASLLDEIGLGSHPTNACSVIGDDPELDEFMESYCDVLHRYKEELSKPFNDAISFLNNMQSELSNLCKGTLTKSSDCRSGLTSDEELSCGEAETLESRELKEMLRRKYSGYLGSLRKEFLKKRKKGKLPKDARMALLDCWNTHYRWPYPTEEEKRKLSEITGLDQKQINNWFINQRKRHWKPSEDMKFAGMEGVGEPVYYDSDGGPQFGDI 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03235 296 SMART ELK_2 184 205 IPR005539 GO:0003677
Bva13g03235 296 ProSiteProfiles 'Homeobox' domain profile. 204 267 IPR001356 GO:0003677
Bva13g03235 296 Pfam KNOX1 domain 57 94 IPR005540 GO:0003677|GO:0005634
Bva13g03235 296 CDD homeodomain 230 268 IPR001356 GO:0003677
Bva13g03235 296 SUPERFAMILY Homeodomain-like 206 274 IPR009057 -
Bva13g03235 296 SMART KNOX1_2 55 99 IPR005540 GO:0003677|GO:0005634
Bva13g03235 296 SMART KNOX2_2 102 153 IPR005541 GO:0003677|GO:0005634
Bva13g03235 296 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 278 - -
Bva13g03235 296 Pfam Homeobox KN domain 225 263 IPR008422 GO:0003677|GO:0006355
Bva13g03235 296 ProSiteProfiles ELK domain profile. 184 204 IPR005539 GO:0003677
Bva13g03235 296 Pfam ELK domain 184 205 IPR005539 GO:0003677
Bva13g03235 296 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 10 1 278 - -
Bva13g03235 296 Gene3D - 202 275 - -
Bva13g03235 296 Pfam KNOX2 domain 106 152 IPR005541 GO:0003677|GO:0005634
Bva13g03235 296 ProSitePatterns 'Homeobox' domain signature. 242 265 IPR017970 GO:0000981|GO:0006355
Bva13g03235 296 SMART HOX_1 206 271 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03235 Bva-Chr13 22520343 22523725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03235 51 277 Homeobox Transcription Factor Family AT1G23380 53.527 1.04e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Bva13g03235 KNOX2 1.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03235 - - tcc:18600575 375.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g03234 04 26253258 26257473 Bva13g03235 13 22520343 22523725 BWGD
Bva13g03235 13 22520343 22523725 Bva13g03235 13 22520343 22523725 ECH