Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03234 ATGGATTTCCAGGGATTTTTGAATGACCTGCAGGATTGGGAGCTTTCACGAAAAGACAAAGCGCAGAAAATGAAGTTACAATCTCATCATAATGAAAAGttgGGTTCATCTTCTCGAAATACTGGATCAGTGGGAGTGGAGAGCGCATCAAGAGGAGAAACTCTTTCATTTGACGATGCAAGAAGTACTTCAGGACAATatgatttctcaaaaaataaggATACGATCCATCGTGTCCATAGCAGTTTAATTAGTGAAGATGTTCCTGATGCTGCTTCTGAGAAAGAACTGGGTAATGAATACTTCAAGCAGAAGAAGTTTAAGGAAGCTATTGACTGCTATTCAAGAAGCCTAGCCTTTTCACCAACAGCTGTGGCATATGCAAATAGGGCAATGGCCTATATCAAACTCCGAAGATTCCAAGAGGCTGAGGATGACTGCACAGAAGCCTTAAATCTAGACGATCGTTACATAAAAGCTTACTCACGTAGAGCAACAGCTAGAAAAGAGCTTGGAAAACTTAAAGAATCTATGGAAGATGCTGAGTTTGCCCTGAGGTTGGAACCTAATAATCAAGAAATCAAGAAACAGTATGCTGATTCCAAGTCTTTGTATGAGAAAACAGTTATTCAGAAGGCATCTGTAGCTCTGAGAAATTCTTTAGAGGGAACTCGAAAGGTGGGAAAGTCAGAGACAAAAGTCAATGGACACAGCACCCATCCTTTTTCAAATGGCACTCAATCAGGGCGAGCTGAAGTTGAAGATCTCACGAAGggaaatgataagaaaatacCTGCTAAAGCATCCGTGTCAGTGGAGGAGGTAGATAACAACGTTAAAAGAGCCAGAAGCAGGACTGGAGGACAAAAAGTTGATGGCTCTAAGAAAGAGGCCAGTCCAAGCAATAGTGTGGAGAGTGTCAAGAGAAATCTCAGAATTGGTAAGCAGGACATAAAGGCATCTGTTCAACAGCTTGCATCTCGTGCAGCTTCTCGAGCAATGGCTGAAGCTGCGAAGAACATAACACCACCAACTTCAGCTTATCAGTTTGAGGTCTCATGGGGAGGGTTTTCAGGTGACCAGGCATTACAGTATCGTCTATTAAAGGCTGTATCTCCGCAGGAATTGCCGCATGTATTCAAAAATGCCCTATCTGCTGCCCTGTTAATCGACATCATCAAATGTGTTGCATCCTTTTTCACTGAAGATATGGATCTGGCTGTCAGTTATATAGAGCATTTGACCAAGGTTGCTAGATTCGATATGCTTATGATGTGTCTTTCATCAAAAGATAAGGatgATCTCCGAAAGATCTGGGATGAAGTATTTTGTAACGAGGCAACGCCAATGGAGTATGCAGAGATTCTTGACAACTTCCGATCAAAATACTGCGTTAGACAGTG 1403 0.4105 MDFQGFLNDLQDWELSRKDKAQKMKLQSHHNEKLGSSSRNTGSVGVESASRGETLSFDDARSTSGQYDFSKNKDTIHRVHSSLISEDVPDAASEKELGNEYFKQKKFKEAIDCYSRSLAFSPTAVAYANRAMAYIKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESMEDAEFALRLEPNNQEIKKQYADSKSLYEKTVIQKASVALRNSLEGTRKVGKSETKVNGHSTHPFSNGTQSGRAEVEDLTKGNDKKIPAKASVSVEEVDNNVKRARSRTGGQKVDGSKKEASPSNSVESVKRNLRIGKQDIKASVQQLASRAASRAMAEAAKNITPPTSAYQFEVSWGGFSGDQALQYRLLKAVSPQELPHVFKNALSAALLIDIIKCVASFFTEDMDLAVSYIEHLTKVARFDMLMMCLSSKDKDDLRKIWDEVFCNEATPMEYAEILDNFRSKYCVRQ 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03234 467 SMART tpr_5 91 124 IPR019734 GO:0005515
Bva13g03234 467 SMART tpr_5 158 191 IPR019734 GO:0005515
Bva13g03234 467 SMART tpr_5 125 157 IPR019734 GO:0005515
Bva13g03234 467 Pfam Potential Monad-binding region of RPAP3 343 432 IPR025986 -
Bva13g03234 467 MobiDBLite consensus disorder prediction 234 253 - -
Bva13g03234 467 MobiDBLite consensus disorder prediction 20 59 - -
Bva13g03234 467 PANTHER OS05G0129900 PROTEIN 1 466 - -
Bva13g03234 467 ProSiteProfiles TPR repeat profile. 91 124 IPR019734 GO:0005515
Bva13g03234 467 Pfam Tetratricopeptide repeat 95 123 IPR001440 GO:0005515
Bva13g03234 467 Pfam Tetratricopeptide repeat 124 154 IPR001440 GO:0005515
Bva13g03234 467 SUPERFAMILY TPR-like 86 204 IPR011990 GO:0005515
Bva13g03234 467 ProSiteProfiles TPR repeat profile. 158 191 IPR019734 GO:0005515
Bva13g03234 467 MobiDBLite consensus disorder prediction 274 292 - -
Bva13g03234 467 MobiDBLite consensus disorder prediction 224 307 - -
Bva13g03234 467 MobiDBLite consensus disorder prediction 33 59 - -
Bva13g03234 467 Gene3D Tetratricopeptide repeat domain 80 189 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03234 Bva-Chr13 22510646 22515890 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03234 95 161 U-box Gene Family AT3G07370 39.706 3.93e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03234 K23002 - gmx:100808255 610.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g03234 13 22510646 22515890 Bva13g03234 13 22510646 22515890 ECH