Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03230 ATGCAGAGGAAATTTCCAGAGAGTGGAAACAAGGCCTCTGATAGCCTTGTTCCCTCGAATGCCAATGCTATCGTTAGCACTATCTCACCCCATGCCAAACAGTGCTCGTTCGACGACTCAGAGAATTTTTACGAGAAACTCAACGAGTTTTTGGAGTCCTCTGGCTTCAGTCTAGTCTTTGATTTTCGACCTCAAGTGCTGGACCTATACCTGCTTTACTTGGAGGTGAATCGAAGAGGAGGTTACCATCAGGTTAGCAAAGACGGGAAATGGGATGAGCTTGTCTCTGCTTTAAAATTGGAAAGTGAAAATAACGCCAAGTTACCTACTCAACTTGAAAAGCTCTATGCAAATTTGCTTTATAAGATTGTGGAAGAGTATTGCAACGGGAGTCCTAAAAAACTAGCTGGAGCGCATGAAATCTCTGGTCTTCAAACACATACAAGGCATAGCACAAAGAAGAGGCGGAATTCTAACCAGGACACCATCGTAGGATCTTCGGAGCATACGCTTTTGCTGCTGCCAAGTGAAACCAACAAACGTGAAGGTCCTCCTATCAAACCAAGGAATTGTTATCAAATTTTTCTAAGGAACGAATGCACAAATTTAAACGGCAAGGGTAAGCTTTCTCGAGCAATGGCCACTGCGAAATGGAAGAACATGTCTGCAATAGAGAGACAGGAGTATGTCCAGTTAAGCATTTTGGacaaagaaagatatattGAAGAGATGGAAGCTTTTAAATTGCAAAATACCACGGCTGGGAAGGAACGAGGCATAAATGGCGATGGTGACTACCGTGTAACTCAACCTGATGCAGAGAGTACTCTCCTTGTGCCCAATAATAGTGCATTAATGGACTTAGCTCTTATCAAGGCTCTCAAACCACCAGGAGATTCCTTTGATTGGTATGGGTG 917 0.4297 MQRKFPESGNKASDSLVPSNANAIVSTISPHAKQCSFDDSENFYEKLNEFLESSGFSLVFDFRPQVLDLYLLYLEVNRRGGYHQVSKDGKWDELVSALKLESENNAKLPTQLEKLYANLLYKIVEEYCNGSPKKLAGAHEISGLQTHTRHSTKKRRNSNQDTIVGSSEHTLLLLPSETNKREGPPIKPRNCYQIFLRNECTNLNGKGKLSRAMATAKWKNMSAIERQEYVQLSILDKERYIEEMEAFKLQNTTAGKERGINGDGDYRVTQPDAESTLLVPNNSALMDLALIKALKPPGDSFDWYG 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03230 305 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 185 248 IPR009071 -
Bva13g03230 305 SUPERFAMILY ARID-like 39 122 IPR036431 GO:0003677
Bva13g03230 305 MobiDBLite consensus disorder prediction 144 185 - -
Bva13g03230 305 CDD HMG-box 185 245 - -
Bva13g03230 305 Gene3D - 24 143 IPR036431 GO:0003677
Bva13g03230 305 SMART ARID_2 34 124 - -
Bva13g03230 305 ProSiteProfiles ARID domain profile. 37 128 IPR001606 GO:0003677
Bva13g03230 305 MobiDBLite consensus disorder prediction 158 174 - -
Bva13g03230 305 PANTHER HMG (HIGH MOBILITY GROUP) BOX PROTEIN 20 283 - -
Bva13g03230 305 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 20 283 - -
Bva13g03230 305 SMART bright_3 38 130 IPR001606 GO:0003677
Bva13g03230 305 Pfam ARID/BRIGHT DNA binding domain 40 121 IPR001606 GO:0003677
Bva13g03230 305 SUPERFAMILY HMG-box 180 252 IPR036910 -
Bva13g03230 305 Gene3D High mobility group box domain 176 263 IPR036910 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03230 5 127 ARID Transcription Factor Family AT3G13350 29.032 2.33e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Bva13g03230 ARID 1.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03230 - - pvu:PHAVU_007G202100g 155.606