Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03201 ATGGGTGCTGATCTTAATGCTGAATTATCCAAGAAAACTTCCATTGGTATTAAGGTTTGGGAGATAATTGGAATTGCAGTTGGATTGTTTATTATAATCATCCTCACCGTGCTATCACTCTGTCTTACTTCACGGAAGAAGTCAAGGAAAGCTAAAGACAGGATGCCCGTCAGTCAAATACCCACTGTCTCAAAGGAAATCAAGGAAGTGAGAGTTGAGCAAGTATCAGCAAATGGATTTATGCCTCGTGAGGGAATACTTCTTACAATACATGACAAATCAAGTGACAAAGAATCAGACAAAGTTATGGTTCATTTGGATGTGGGGAAGATGAAGAATGGGGATAATAGCAACCATTCAGATTCATTTCATCACTTTGAGAGAGATGGAGGTGGGTCACAGTCGGAAGATGGGAGCTCTGGCACAGTTACAGTGTATAAGCCCTCTTCTTCATATCCTATAACAGCTCCTTCCCCTCTGTCTGGCCTTCCTGAGTTCTCTCATTTGGGTTGGGGCCATTGGTTTACACTGAGGGATCTTGAACTTGCTACAAACCGGTTTTCCAAAGAAAATGTGATTGGTGAGGGTGGTTATGGAGTTGTTTATCGCGGACAGTTGATCAATGGGACTCCAGTGGCAGTTAAAAAGATACTCAACAATATAGGTCAAGCAGAGAAAGAATTTAGGGTGGAAGTCGAAGCTATTGGCCACGTTCGACATAAAAATTTGGTTCGCCTTTTGGGATACTGCATGGAAGGGACTCATAGGATGTTAGTTTATGAGTACGTAAATAATGGAAACTTAGAGCAGTGGCTTCATGGAGCTATGCGACATCATGGATATCTTACCTGGGAAGCGCGTATCAAAATTCTCCTTGGCATGGCTAAAGCTCTTGCATATTTGCATGAAGCCATTGAACCAAAGGTTGTACACCGAGATATCAAGTCAAGCAACATATTAATTGATGATGACTTCAATGCTAAAGTCTCTGATTTTGGCCTGGCCAAGCTGCTGGGTGCTGGAAAGAGTCATGTCACAACTCGAGTTATGGGAACCTTTGGATATGTTGCTCCTGAATATGCAAATACTGGccttttaaatgaaaagagtGATGTTTATAGCTTTGGCGTTGTGCTTTTGGAAGCAATTACTGGAAGAGATCCAGTTGATTATGGCCGTCCAGCTCAAGAAGTTAATCTGGTTGATTGGCTGAAGATGATGGTCGGAAGCAGGCGATCAGAGGAAGTGGTAGATCCAAACATTGAAGTGAGACCACCAACAAGAGCTCTAAAACGAGCCCTCTTAACTGCTTTGAGATGTCTGGATCCAGATTCTGAAAAAAGACCCAAGATGGGTCAAGTTGTTCGTATGCTCGAGTCAGAAGAATACCCCTTACCAAGAGAGGACCGGAGGCACCGAAGAAGAGCAGGTAGCAATGAAATTGAATCTCAGAGGGAATATTCTGACACGGACAGAAGTGAGAATCAGCAGACATA 1496 0.4251 MGADLNAELSKKTSIGIKVWEIIGIAVGLFIIIILTVLSLCLTSRKKSRKAKDRMPVSQIPTVSKEIKEVRVEQVSANGFMPREGILLTIHDKSSDKESDKVMVHLDVGKMKNGDNSNHSDSFHHFERDGGGSQSEDGSSGTVTVYKPSSSYPITAPSPLSGLPEFSHLGWGHWFTLRDLELATNRFSKENVIGEGGYGVVYRGQLINGTPVAVKKILNNIGQAEKEFRVEVEAIGHVRHKNLVRLLGYCMEGTHRMLVYEYVNNGNLEQWLHGAMRHHGYLTWEARIKILLGMAKALAYLHEAIEPKVVHRDIKSSNILIDDDFNAKVSDFGLAKLLGAGKSHVTTRVMGTFGYVAPEYANTGLLNEKSDVYSFGVVLLEAITGRDPVDYGRPAQEVNLVDWLKMMVGSRRSEEVVDPNIEVRPPTRALKRALLTALRCLDPDSEKRPKMGQVVRMLESEEYPLPREDRRHRRRAGSNEIESQREYSDTDRSENQQT 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03201 498 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 3 496 - -
Bva13g03201 498 Gene3D Transferase(Phosphotransferase) domain 1 263 473 - -
Bva13g03201 498 MobiDBLite consensus disorder prediction 111 144 - -
Bva13g03201 498 CDD STKc_IRAK 193 459 - -
Bva13g03201 498 Pfam Protein kinase domain 188 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva13g03201 498 ProSitePatterns Protein kinases ATP-binding region signature. 193 216 IPR017441 GO:0005524
Bva13g03201 498 MobiDBLite consensus disorder prediction 444 498 - -
Bva13g03201 498 ProSiteProfiles Protein kinase domain profile. 187 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva13g03201 498 ProSitePatterns Serine/Threonine protein kinases active-site signature. 309 321 IPR008271 GO:0004672|GO:0006468
Bva13g03201 498 MobiDBLite consensus disorder prediction 111 132 - -
Bva13g03201 498 SUPERFAMILY Protein kinase-like (PK-like) 171 468 IPR011009 -
Bva13g03201 498 SMART serkin_6 187 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva13g03201 498 Gene3D Phosphorylase Kinase; domain 1 169 262 - -
Bva13g03201 498 PANTHER OS01G0323000 PROTEIN 3 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03201 Bva-Chr13 22356058 22360462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03201 164 461 Trihelix Transcription Factor Family AT1G70460 49.835 2.31e-91 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Bva13g03201 Pkinase 8.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03201 - - vvi:100261416 868.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g03201 13 22356058 22360462 Bva04g03208 04 26119748 26123608 BWGD
Bva13g03201 13 22356058 22360462 Bva04g03208 04 26119748 26123608 ECH
Bva13g03201 13 22356058 22360462 Bva13g03201 13 22356058 22360462 ECH