Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03186 ATGCCTCTCTACGAGTTATACGGGCTGGCTAAAGCGAAGCTTCATTCTGAAGAAATAAACACCGCATGTGCACCTGATCAATCTTCCGAACCCGAGAGTGATTTTTTTGAGCTGGTTTGGGAAAATGGCCAGATTTCGATGCAGGGTCAGTCCAGCAGAGCTAGAAAGAGCCCTATTTCTAGGAGTTTGCCATCTCACTGCTTACCATCGCAAAGTCCCAATTGTCGAGATAGAGATGCAGGACATGGTGGCAACACAAGGATGGGAAAGTTTGGGGATTTGGATTCTGGATTGAATGATATTCCAATGTCAGTGCCATCAGGTGAAGTGGATTTGAGTCTAGAAGAAGACATTATACCTTGGTTCAATTATTCAATAGATGGATCTTTGCAACATGATTATAGTACTGATTTACTGCATGAAGTATCTGGGGTCACTGGAAATGATCTTCCTGCCTCAAATAGTTTTCCCCTTatggataaaagaaatagttttaaTCAGATTTTGAGGGATTCTCATAAAAATTCTGTTTCCGTGCGTGATGTCCCAAATTCAGAACAAGGGAACGTTTCAAAGGGTTCTTCTGcaggagaagttgagaccatTACAGCAAAAGCTAGCACAAGTCAGTTATACACACCATTTTCGCAGCAATGTCAAACATCATTTACTTCTGTTAGATCCAGAGTATCAGAAAATAATTGTGGGGAAATTACTCAGATTCCACCTTCCTCAAGTGATTTTTCTGGCTTAAAGATGCAGAAGCAAGATTCAACTACGCCTTGCAATGGTTCTTTCATAATGAATTTCTCCCATTTTGCAAGACCCGCTGCTTTAGTTAGAGCTAATCTTCAGAGCATTGGTTTGATGGCTGGTTCTTCAGCAAGATCAGAAAACATgggaaataagaagaaagatacTGTTGGGACTAGCAGCAATCCTACCGAATCAACCCTCATTGATTCAAGAGGTGAATGTCTAAAGGAATCAACTAGATACTGCCAGCAGCCTATGGAGACTTCCAAGGCTGATTTGAAACCTTTGGAGTCAAAATCTCTTGAACGGAAGTCTGCTGCTTCTAAACAGTCTGACCCTGTCTGTAAAGAGGATGTCTTTAAAACTGATCAAACTTCCAATCTGGTTGTTGCTGAAAGTTCCCTTAAAGGACAGACAGCTGCTGGGAAAAATATGGAGCCAGTAGTAACCTCTTCCTCTATGTGCTCAGGCAATGGAATGGATAGAGGTTCAGACGAtggaaatcaaaatttgaagcGAAAAAGTAGAGATGCTGAGGAATCCGATTGCCACAGTGAAGACAATGAGGAAGAATCAGTGGATGCTAAAAAAGTAACTCCTGTGCGACCCAAGAGAAGCCGTGCAGCTGAAGTGCATAATCTATCTGAAAGGAGGCGAAGAGACAGGATAAACGAGAAGATGCGTGCATTGCAAGAACTCATACCAAACTGCAATAAGGTGGATAAAGCATCAATGCTTGACGAGGCAATTGAGTATCTTAAAACGCTTCAGCTCCAAGTTCAAATTATGTCAATGGGAGCTGGTTTATATATGCCTCAAATGATGTTCCCACCTGGAATGCATGCACCACATATGACTCCATTTTTACCTATGGGTGTTGGCATGCAAATGGGGCTAGGAATGGGTTATGGGATGGGTATGCCTGACATAAGTGGTGGATCTTCCAGATTCCCAATGATGCAGGTGCCCCAAATGCAAGGAACTCATCTCCCTGTTCCACCAATGCCTGGACACACTGCATTACACGGGATGCCAAGATCAAATCCTCAAGGCTTCGCATTTCCTGGTCAGGGATTTTCCATGCCAATGCCACAAGTTCCACCAGTTTATTTTTCAGGTGGGCCTCTTATGAACAATACTGTTCTAGGACTAAATGCCTGTGGAGCAGCAGGACTTATGGGAAATGTGGATTCGGTTTCACCCTCTGGCTCGAAGGATCCACCACCAAATTTGAACACACAAGTTATGCAAACCACTGTTGGCAATAACTCAACTACTCAGATGCCTAACCAGTGCGAGGCAACAAACGTTGGATGTGAACAGTCTTCTCTGGCGCATAACAATGGTCATGCCTCCAATGTTAATGGCAGTGAAGTTGTAAATCCTGGTAAAGATGATAAACCTGTGATTGGTAAATCTTGTGAGTA 2183 0.4169 MPLYELYGLAKAKLHSEEINTACAPDQSSEPESDFFELVWENGQISMQGQSSRARKSPISRSLPSHCLPSQSPNCRDRDAGHGGNTRMGKFGDLDSGLNDIPMSVPSGEVDLSLEEDIIPWFNYSIDGSLQHDYSTDLLHEVSGVTGNDLPASNSFPLMDKRNSFNQILRDSHKNSVSVRDVPNSEQGNVSKGSSAGEVETITAKASTSQLYTPFSQQCQTSFTSVRSRVSENNCGEITQIPPSSSDFSGLKMQKQDSTTPCNGSFIMNFSHFARPAALVRANLQSIGLMAGSSARSENMGNKKKDTVGTSSNPTESTLIDSRGECLKESTRYCQQPMETSKADLKPLESKSLERKSAASKQSDPVCKEDVFKTDQTSNLVVAESSLKGQTAAGKNMEPVVTSSSMCSGNGMDRGSDDGNQNLKRKSRDAEESDCHSEDNEEESVDAKKVTPVRPKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGAGLYMPQMMFPPGMHAPHMTPFLPMGVGMQMGLGMGYGMGMPDISGGSSRFPMMQVPQMQGTHLPVPPMPGHTALHGMPRSNPQGFAFPGQGFSMPMPQVPPVYFSGGPLMNNTVLGLNACGAAGLMGNVDSVSPSGSKDPPPNLNTQVMQTTVGNNSTTQMPNQCEATNVGCEQSSLAHNNGHASNVNGSEVVNPGKDDKPVIGKSCE 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03186 727 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 459 508 IPR011598 GO:0046983
Bva13g03186 727 MobiDBLite consensus disorder prediction 418 434 - -
Bva13g03186 727 MobiDBLite consensus disorder prediction 334 370 - -
Bva13g03186 727 MobiDBLite consensus disorder prediction 47 72 - -
Bva13g03186 727 MobiDBLite consensus disorder prediction 695 711 - -
Bva13g03186 727 CDD bHLH_AtPIF_like 459 521 - -
Bva13g03186 727 SMART finulus 465 514 IPR011598 GO:0046983
Bva13g03186 727 PANTHER TRANSCRIPTION FACTOR PIF3 1 681 - -
Bva13g03186 727 MobiDBLite consensus disorder prediction 388 465 - -
Bva13g03186 727 PANTHER TRANSCRIPTION FACTOR PIF3 1 681 IPR044273 GO:0003700|GO:0006355
Bva13g03186 727 Pfam Helix-loop-helix DNA-binding domain 463 509 IPR011598 GO:0046983
Bva13g03186 727 MobiDBLite consensus disorder prediction 293 320 - -
Bva13g03186 727 MobiDBLite consensus disorder prediction 441 465 - -
Bva13g03186 727 MobiDBLite consensus disorder prediction 47 86 - -
Bva13g03186 727 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 456 525 IPR036638 GO:0046983
Bva13g03186 727 Gene3D - 455 517 IPR036638 GO:0046983
Bva13g03186 727 MobiDBLite consensus disorder prediction 695 727 - -
Bva13g03186 727 MobiDBLite consensus disorder prediction 388 417 - -
Bva13g03186 727 MobiDBLite consensus disorder prediction 174 198 - -
Bva13g03186 727 MobiDBLite consensus disorder prediction 293 322 - -
Bva13g03186 727 MobiDBLite consensus disorder prediction 344 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03186 Bva-Chr13 22283148 22287291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03186 1 578 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 37.043 9.41e-76 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva13g03186 HLH 8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03186 K12126 - gmx:100794974 852.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g03186 13 22283148 22287291 Bva13g03186 13 22283148 22287291 ECH