Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03181 ATGGGAATAAAGGGTTTAACAAAGCTTTTAGCTGACAATGCGCCAAAATCCATGAAGGAGCATAAATTCGAGAGCTATTTTGGCCGCAAGATTGCCATTGATGCCAGTATGAGCATCTATCAGTTCCTCATTGTTGTGGGAAGAAGCGGGACTGATATGCTGAAAAATGAGGCTGGTGAAGTTACTAGTCATTTGCAAGGAATGTTTACACGGACAATCAGACTTCTGGAAGCTGGAATGAAGCCTGtATATGTTTTTGATGGGAAGCCACCAGATTTGAAGAAACAAGAGCTGGGAAAACGCAATTCCAAGAGGGCTGATGCTAGTGCGTATTTGACAGAAGCCATGGAGGCTGGCAATAAAGAAGACATTGAAAAATTCAGCAAACGGACTGTAAAGGTGACAAAGCAGCATAATGAAGACTGTAAAAGACTTTTAAGACTCATGGGCGTGCCTGTCGTCGAGGCACCGTCAGAAGCAGAGGCGCAGTGTGCTGCACTTTGCAAATCTGGAAAGgtTTATGCTGTGGCTTCTGAAGACATGGATTCATTAACATTTGGAGTTCCAAGATTTCTTCGCCATTTAATGGATCCTAGCTCAAAAAAAATCCCTGTCATGGAATTTGAAGTTGAAAAGATTTTGGAGGAGCTTAATCTTACCATGGATCAATTCATTGACTTATGCATTCTCGCTGGTTGTGATTATTGTGATAGTATTCGAgGGATTGGGGGACAAACTGCCTTGAAGCTCATACGCCAACATGGCTCTATAGAGAATGTACTGGAGAACATAAATAAAGACagGTACCGAATTCCAGATGATTGGCCATATCAGCAGGCTCGTCAGCTTTTTAAAGAACCCTTTGTAATAACTGAAGAAAAGCAACTTGATCTTAAGTGGACTGCTCCAGATGAAGAAGGGTTGCTTACGTTTCTGGTAAATGAGAATGGGTTCAACAGTGATCGGGTGACAAAGgcaatagaaaaaataaaagcagcaAAGAACAAGTCATCACAAGGACGaaacagattgGAGTCATTTTTTAAGCCAGCAGCGAATCCATCTGTACGCGTTAAACGGAAGGAAGGCAAATGCAAGCTTAGATCTTTCAAACCGGCAATTGAGCATAAGATGTTTTCTTTGCAAATTTCTAACCGGTCAATGCCCATGGTGATTAGCAACTTGAGTTTTCCAATATTTAGTACGGGTTCCAAGCTCTCCAACCCACTATGCAGAGGTGTCTACTTTGGTGCCTG 1256 0.4108 MGIKGLTKLLADNAPKSMKEHKFESYFGRKIAIDASMSIYQFLIVVGRSGTDMLKNEAGEVTSHLQGMFTRTIRLLEAGMKPVYVFDGKPPDLKKQELGKRNSKRADASAYLTEAMEAGNKEDIEKFSKRTVKVTKQHNEDCKRLLRLMGVPVVEAPSEAEAQCAALCKSGKVYAVASEDMDSLTFGVPRFLRHLMDPSSKKIPVMEFEVEKILEELNLTMDQFIDLCILAGCDYCDSIRGIGGQTALKLIRQHGSIENVLENINKDRYRIPDDWPYQQARQLFKEPFVITEEKQLDLKWTAPDEEGLLTFLVNENGFNSDRVTKAIEKIKAAKNKSSQGRNRLESFFKPAANPSVRVKRKEGKCKLRSFKPAIEHKMFSLQISNRSMPMVISNLSFPIFSTGSKLSNPLCRGVYFGA 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03181 418 SMART xpgineu 147 219 IPR006086 GO:0004518
Bva13g03181 418 Gene3D - 219 286 - -
Bva13g03181 418 SMART HhH_4 221 254 IPR008918 GO:0003677|GO:0003824
Bva13g03181 418 PANTHER FLAP ENDONUCLEASE 1 1 383 - -
Bva13g03181 418 CDD PIN_FEN1 4 332 - -
Bva13g03181 418 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 383 IPR006084 -
Bva13g03181 418 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 219 353 IPR036279 -
Bva13g03181 418 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 224 239 IPR006084 -
Bva13g03181 418 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Bva13g03181 418 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 167 187 IPR006084 -
Bva13g03181 418 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
Bva13g03181 418 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Bva13g03181 418 CDD H3TH_FEN1-Euk 222 290 - -
Bva13g03181 418 Pfam XPG I-region 150 234 IPR006086 GO:0004518
Bva13g03181 418 SUPERFAMILY PIN domain-like 2 234 IPR029060 -
Bva13g03181 418 Pfam XPG N-terminal domain 1 107 IPR006085 GO:0004518
Bva13g03181 418 Hamap Flap endonuclease 1 [fen]. 1 349 IPR023426 GO:0016788
Bva13g03181 418 Gene3D - 2 218 - -
Bva13g03181 418 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788
Bva13g03181 418 SMART xpgn3 1 108 IPR006085 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03181 Bva-Chr13 22246086 22252119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03181 1 414 Core DNA Replication Machinery Family AT5G26680 78.744 0.0 668
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03181 K04799 - jre:109008307 681.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g03181 13 22246086 22252119 Bva13g03181 13 22246086 22252119 ECH