Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03176 ATGGCTTGGAGGGAGCTGGGAAGAAAGAAGATATATGCGAATTTTGCTCGTGCTTTGACTACAGTGCCATCTAAGCATGTGCTAGGGTCCATTTATGCATCTACATTTGGAGGTGCAGCAAAATCCATCTGTGCATCTGTAAGATGCATGCCTGAGGGCATTGGCCACTCATATATAGGAGCAGCCGGATTATGCAATGGCGCAAATGATCATGGAATACGGTGCTTCCACGCAAGTTCAGAAGTCTGGGCAAGATCCGATGATCAGGCATTTGGTTTAAAGTCCCTAAAGAAGGAGAAGTTTGCGAAAAAGAATAAGAGGAACCAGCCACCTGTTGAAGCTCCTTATGTCCCTCGTAATCTGGGCAAAGCTAGAGAACCCCTTCCTGATAAAACGATTGAAATATTTGAAGGCATGGCACTTGTTGAGCTGGCCAAGCGTAGTGGAAAGTCAGTTTCTTCCGTGCGGGATGTTCTTGTAAATGTTGGGGAAAAGGTTGAATCAGAGTTTGAGACTCTTAGCATTGATCTTGTGGAGCTAGTTGCAATGGAAATCGGCCTCAATGTTAAGAGGCTGCATTCTTCTGAAGGTGCAGAAATTTTACCACGTCCAGCAGTTGTAACAGTCATGGGTCATGTTGATCATGGTAAAACTTCCCTTCTAGATGCTTTGCGTCAAACATCAGTGGCAGCCAAGGAAGCTGGAGGCATAACTCAGCATGTAGGTGCCTTTGTGGTGGCCATGCCTTCAGGAGCATCAATCACGTTTCTTGACACTCCTGGACATGCCGCATTTAGTGCAATGCGGGCAAGAGGTGCAGCAGTAACAGATATAGTAGTGCTAGTTGTGGCTGCAGATGATGGAGTAATGCCTCAAACTCTTGAAGCCATGTCCCATGCAAAAGCAGCTAATGTACCAATGGTGGTTGCCATTAATAAATGCGATAAACCAGGTGCAAATTCTGAAAGAGTGAAACTGCAGCTAGCTTCAGAGGGCCTACTGCTGGAGGAGATGGGTGGGGATGTTCAAGTGGTTGAAATTTCAGCCACTAAAAAAACTGGACTGGATAAACTGGAGGAAGCATTGCTTCTCCAGGCAGAAATGATGGATCTGAAATCTCGAATAGATGGGCCTGCTCAAGCCTATGTGGTGGAAGCAAGACTTGACAAAGGACGGGGTCCGTTGGCTACTGCCATAGTGAAGTCGGGGACTCTTGTTAGTGGCCAGTATGTTGTCGTGGGCTCGGAATGGGGCAGAATAAGGGCTGTTAGAGATATGGTAGGGAAGTTAACTGAGAGAGCAACACCTGCAATGCCTATTGAGATTGAAGGACTTCGGGGGCTTCCGATGGCTGGTGAtgatattgttgttgttgacaGTGAGGAGCGAGCTCGAATGCTTAGTGCTGGTAGGAAAAGGAAATCTGAGAAGGATAGACTTGCAAAGAGGATCCAGGAAAAGGCGGAGCCCGTGGAATCACCAGAGGAGACTTCACGGAGTGTTGAACTGCCAATAATTGTAAAAGCAGATGTACAGGGCACTGTTCAAGCAGTCACAGATGCATTGAGAACTTTAAGTAGTCCTCAGGTTTTCGTGAATGTTGTCCATGTTGGTGTAGGGCCTATTTCTCAATCTGATGTGGACCTAGCACAGGCTTGTGGTGCATGCATAGTCGGATTCAATGTGAAGAGTCCACCTAGTTCTGTCAGTCTTGCCGCAGCTCAAGCCAATATAAAGATAAAGCTGCACCGGGTGATTTACCACCTATTGGAGGACATAGGCGATTTGATAATTGAGAAGGCACCCGGGACGTTAGAGACCCAAGTAGCTGGGGAGGCAGAGGTGCTGAATATCTTTGAGATCAAAGGGAGGAAGAGGTCCGATGAAGCTGTGAAGATAGCTGGTTGTCGGGTTATTGATGGTAATATGATCAACTTAGCAACCATGAGGCTTCTGAGGAGTGGGGAAGTTGTGTTTGAAGGGCCATGTGCATCTCTTAAGCGAGAGAAGCAAGATGTTCAGACAGTGAACAGAGGCAATGAGTGTGGACTTGTACTCCAGGATTGGAATGATTTTCAGATCGGAGATGTCATCCAGTGCTTGGATCAAGTCGTAAGGAAACCCAAGTTCATTAAGTCACAGAGTGGTGCTGTTCGTATTGAGTGCTG 2168 0.4654 MAWRELGRKKIYANFARALTTVPSKHVLGSIYASTFGGAAKSICASVRCMPEGIGHSYIGAAGLCNGANDHGIRCFHASSEVWARSDDQAFGLKSLKKEKFAKKNKRNQPPVEAPYVPRNLGKAREPLPDKTIEIFEGMALVELAKRSGKSVSSVRDVLVNVGEKVESEFETLSIDLVELVAMEIGLNVKRLHSSEGAEILPRPAVVTVMGHVDHGKTSLLDALRQTSVAAKEAGGITQHVGAFVVAMPSGASITFLDTPGHAAFSAMRARGAAVTDIVVLVVAADDGVMPQTLEAMSHAKAANVPMVVAINKCDKPGANSERVKLQLASEGLLLEEMGGDVQVVEISATKKTGLDKLEEALLLQAEMMDLKSRIDGPAQAYVVEARLDKGRGPLATAIVKSGTLVSGQYVVVGSEWGRIRAVRDMVGKLTERATPAMPIEIEGLRGLPMAGDDIVVVDSEERARMLSAGRKRKSEKDRLAKRIQEKAEPVESPEETSRSVELPIIVKADVQGTVQAVTDALRTLSSPQVFVNVVHVGVGPISQSDVDLAQACGACIVGFNVKSPPSSVSLAAAQANIKIKLHRVIYHLLEDIGDLIIEKAPGTLETQVAGEAEVLNIFEIKGRKRSDEAVKIAGCRVIDGNMINLATMRLLRSGEVVFEGPCASLKREKQDVQTVNRGNECGLVLQDWNDFQIGDVIQCLDQVVRKPKFIKSQSGAVRIEC 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03176 722 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 75 713 IPR015760 -
Bva13g03176 722 Hamap Translation initiation factor IF-2 [infB]. 8 708 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Bva13g03176 722 Gene3D Translation factors 375 492 - -
Bva13g03176 722 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 370 IPR027417 -
Bva13g03176 722 CDD mtIF2_IVc 611 700 - -
Bva13g03176 722 TIGRFAM IF-2: translation initiation factor IF-2 131 704 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Bva13g03176 722 SUPERFAMILY Translation proteins 376 459 IPR009000 -
Bva13g03176 722 Gene3D - 200 374 IPR027417 -
Bva13g03176 722 Pfam Elongation factor Tu GTP binding domain 207 364 IPR000795 GO:0003924|GO:0005525
Bva13g03176 722 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 498 611 IPR036925 -
Bva13g03176 722 Pfam Translation-initiation factor 2 483 593 IPR023115 -
Bva13g03176 722 TIGRFAM small_GTP: small GTP-binding protein domain 205 358 IPR005225 GO:0005525
Bva13g03176 722 MobiDBLite consensus disorder prediction 468 496 - -
Bva13g03176 722 MobiDBLite consensus disorder prediction 102 123 - -
Bva13g03176 722 SUPERFAMILY Translation proteins 606 706 IPR009000 -
Bva13g03176 722 CDD IF2_mtIF2_II 378 473 IPR044145 -
Bva13g03176 722 Gene3D Translation factors 605 707 - -
Bva13g03176 722 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 202 372 IPR000795 GO:0003924|GO:0005525
Bva13g03176 722 CDD IF2_eIF5B 206 369 - -
Bva13g03176 722 Gene3D - 498 603 IPR036925 -
Bva13g03176 722 PANTHER TRANSLATION INITIATION FACTOR IF-2, MITOCHONDRIAL 75 713 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03176 Bva-Chr13 22222107 22227655 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03176 193 591 Eukaryotic Initiation Factors Gene Family AT1G76810 27.292 5.30e-27 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03176 K02519 - gmx:100781314 1050.04