Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03171 ATGGCTTCTGTTACTGGTGTTTCTTCAATACTCCAGACTCCGGCTCTGGAACTATATAAAAGGAACACCACAACGGGTAATGCGAATTCTGTTTCGTTGCTATTACCAGATAACAAGTCCCACTTTAACAACGTTTTGAGATCTCATCTTGGTAATAATTGTATTGGCAATTTCAAGAGTGGGTTTAAGCCGAGACTTAGTTTCATTCCTTCGGCTATTGCCACACCCAATTCTTCAGTCCTAAGTGAAGAAGCATTCAAGGGTATAGGTAAGGGATTTTCCGTCAGCGAAAACGAGGATTACGACTTCGAGTCTGAAACTGAAGCTTCAGCTGCTGCCCCCCAGGACGAGCTCAACATTTCCAATCTGGGTTTTCCTCCGCGCCTGGTGGAATCACTTCAGAAACGCGGGATTACTCATCTTTTCCCTATTCAgAGAGCTGTGTTAGTACCTGCACTGGAAGGTCGAGATATCATTGCTCGTGCAAAGACTGGGACTGGGAAGACATTAGCCTTTGGAATTCCAATAATTAAACGCCTCAGTGAAGATGAACGGAGTTCTAAGAGGAGGTCTGGTCGCCTTCCTAAAGTGTTGGTCCTTGCACCTACCAGGGAGCTAGCAAAGCAAGTAGAGAAGGAGATTCAAGAATCTGCACCCTTTCTAAACACAGTTTGTGTTTATGGGGGTGTTTCTTATGTTACACAGCAAAATGCACTTTCACGAGGTGTTGATGTGGTGGTTGGAACTCCTGGTAGAATAATTGACCTAATAAATGGGAATAGCCTTAAACTGAGTGAAGTTGAGTATTTAGTCCTTGATGAAGCTGATCGAATGCTTGCTGTTGGGTTTGAGGAGGACGTGGAAGTGATTTTAGAGAAACTTCCATCTGAGAGGCAGAGTATGCTTTTTTCTGCAACCATGCCTGGTTGGGTGAAGAAATTGGCGAGAAAACATATGGACAATCCATTGACTATTGATTTGGTtggagaacaagaagaaaagcttGCAGAAGGGATCAAGCTTTATGCTTTATCAGCCACTCCCACTTCAAAGCGGACAATTCTTTCTGATCTTATAACAGTTTATGCAAAGGGTGGGAAGACTATTGTCTTTACACAGACAAAAAGAGATGCTGATGAAGTCTCATTGGCATTAACAAATAGCATAGCTTCTGAGGCACTGCATGGCGATATATCTCAGCatcagagagagagaacacTGAATGGTTTCCGGCAAGGGAAATTCATAGTACTTGTTGCCACTGATGTTGCAGCTCGTGGACTTGACATTCCCAATGTTGATTTGATCATCCACTATGAGCTTCCCAATGATCCTGAGACTTTTGTACACCGCTCCGGTCGTACTGGGCGTGCAGGAAAAGAAGGTACTGCAATTCTGATGTATACCAGCAGCCAGAGGAGAACAGTTAGATCTCTTGAGCGTGACGTTGGatgcaaatttgaatttatcacTCCGCCAGCTATAGACGAGATTTTGGAGGCATCTGCTCAGCAAGTGGTTGTCACACTCAACAGAGTTCATCCCGAGTCTGTTGAGTTTTTCACCGCAACTGCACAAAAACTAGTTGAAGAACAAGGAGCAACTGCCCTTGCGGCTGCACTAGCACATCTGAGTGGATTCTCTCAACCCCCCTCATCACGGTCTCTTATAAACCATGAGCAGGGTTGGATTACATTCCAACTGACTCGAGATTCGGGTAATTCTAGAGGAATCTTCTCAGCAAGATCGGTCATGGGGTTTCTTTCTGATGTTTATCCTCCAGCTGCTGATGAAGTCGGAAAGATACATATAATTGCAGACGAAAGGGTTCAAGGAGCAGTTTTTGATCTTCCAGATGACATTGCTAAAGAGTTACTGAATAAGGAAATACCACCTGGAAACACTATTTCCAAGATCAGTAAgTTGCCTCCCTTGCAAGATGATGGGCCTCCAAGTGATTTCTATGGGAGGTTTTCTGACAGAGATAGAAGTAGCCGGAGAGGTTCTAGGGATCAGAGAGGTTCCAGGGATCAGAGAGGTTTTAGAAACTCCCGGGGATCGGATAGTGTCCGAGACTCAGATGATGACTTTGATGATTCATTTAGGAGAGGTGGTCGAAGTTATAAAACTGCCAACAGCTGGTCTCGAACGGCAAGAAGCAGCGGGGATGATTGGCTAATTGGAGGAGGTAGACGGTCAAGCAGGTCCTCATCATCAGACAGGAGCTTTGGAGGGTCCTGTTTTATTTGTGGCCAGTCTGGGCATCGGGCATCAGACTGTCCTAACAAGCGAggttatta 2300 0.4378 MASVTGVSSILQTPALELYKRNTTTGNANSVSLLLPDNKSHFNNVLRSHLGNNCIGNFKSGFKPRLSFIPSAIATPNSSVLSEEAFKGIGKGFSVSENEDYDFESETEASAAAPQDELNISNLGFPPRLVESLQKRGITHLFPIQRAVLVPALEGRDIIARAKTGTGKTLAFGIPIIKRLSEDERSSKRRSGRLPKVLVLAPTRELAKQVEKEIQESAPFLNTVCVYGGVSYVTQQNALSRGVDVVVGTPGRIIDLINGNSLKLSEVEYLVLDEADRMLAVGFEEDVEVILEKLPSERQSMLFSATMPGWVKKLARKHMDNPLTIDLVGEQEEKLAEGIKLYALSATPTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKFIVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMYTSSQRRTVRSLERDVGCKFEFITPPAIDEILEASAQQVVVTLNRVHPESVEFFTATAQKLVEEQGATALAAALAHLSGFSQPPSSRSLINHEQGWITFQLTRDSGNSRGIFSARSVMGFLSDVYPPAADEVGKIHIIADERVQGAVFDLPDDIAKELLNKEIPPGNTISKISKLPPLQDDGPPSDFYGRFSDRDRSSRRGSRDQRGSRDQRGFRNSRGSDSVRDSDDDFDDSFRRGGRSYKTANSWSRTARSSGDDWLIGGGRRSSRSSSSDRSFGGSCFICGQSGHRASDCPNKRGY 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03171 766 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 118 146 IPR014014 GO:0003724
Bva13g03171 766 Pfam Zinc knuckle 746 762 IPR001878 GO:0003676|GO:0008270
Bva13g03171 766 MobiDBLite consensus disorder prediction 632 766 - -
Bva13g03171 766 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 271 279 IPR000629 -
Bva13g03171 766 SMART c2hcfinal6 746 762 IPR001878 GO:0003676|GO:0008270
Bva13g03171 766 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 67 759 - -
Bva13g03171 766 CDD GUCT_Hera 553 633 - -
Bva13g03171 766 SMART helicmild6 379 459 IPR001650 -
Bva13g03171 766 MobiDBLite consensus disorder prediction 731 746 - -
Bva13g03171 766 CDD SF2_C_DEAD 339 468 - -
Bva13g03171 766 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 149 325 IPR014001 -
Bva13g03171 766 Gene3D - 345 542 IPR027417 -
Bva13g03171 766 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 354 514 IPR001650 -
Bva13g03171 766 SMART ultradead3 137 342 IPR014001 -
Bva13g03171 766 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 480 IPR027417 -
Bva13g03171 766 Gene3D - 119 329 IPR027417 -
Bva13g03171 766 Pfam Helicase conserved C-terminal domain 351 459 IPR001650 -
Bva13g03171 766 PANTHER - 67 759 - -
Bva13g03171 766 MobiDBLite consensus disorder prediction 654 705 - -
Bva13g03171 766 MobiDBLite consensus disorder prediction 706 720 - -
Bva13g03171 766 ProSiteProfiles Zinc finger CCHC-type profile. 747 762 IPR001878 GO:0003676|GO:0008270
Bva13g03171 766 Gene3D - 718 766 - -
Bva13g03171 766 SUPERFAMILY Retrovirus zinc finger-like domains 728 765 IPR036875 GO:0003676|GO:0008270
Bva13g03171 766 CDD DEADc 129 326 - -
Bva13g03171 766 Pfam DEAD/DEAH box helicase 142 314 IPR011545 GO:0003676|GO:0005524
Bva13g03171 766 Pfam GUCT (NUC152) domain 546 646 IPR012562 GO:0003723|GO:0004386|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03171 Bva-Chr13 22202727 22207643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03171 123 481 Eukaryotic Initiation Factors Gene Family AT1G72730 36.413 1.51e-62 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03171 - - vvi:100251060 1072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g03186 04 25992796 25997911 Bva13g03171 13 22202727 22207643 BWGD
Bva13g03171 13 22202727 22207643 Bva04g03186 04 25992796 25997911 ECH
Bva13g03171 13 22202727 22207643 Bva13g03171 13 22202727 22207643 ECH