Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03162 atggaaaTGCCAGCATTCACCGCTAGTCTAATTTTGTTGGTGGGGTTCTTCTTCACAGAACTTAGAGTGGCATCGGCGGCAGGTTGGCTGAAAGCTCATGCAACATTTTATGGTGGAAGCGATGCCTCAGGAACAATGGGGGGTGCATGTGGTTATGGAAATCTATACACAGATGGTTATGGTACCAATACAGCAGCATTGAGTACTGCTTTATTCAATGACGGCAAGTCATGCGGTGGGTGCTATCAGATTGTTTGTGACGCAACCCAAGTCCCCCAATGGTGCATAAGGGGTAGGCACATCACAATTACTGCCACGAACTTCTGTCCACCAAACTATGCTCTCCCTAATGACAATGGGGGTTGGTGCAATCCTCCAAGACCACACTTCGACATGTCTCAACCTGCTTTTGAGACCATTGCCAAGTACAAAGCTGGAATTGTACCAATCTTCTATAGGAAAGTCGGGTGCAAAAAAAGTGGAGGCATCAGATTTACAATCAATGGAAGAGACTATTTCGAGCTAGTGCTTATAAGCAACGTCGGTGGAGCTGGAGAGATCTCCCGAGTTTGGATCAAAGGATCGAAAATGAGCAACTGGGAATCCATGTCAAGGAATTGGGGTGCTAACTGGCAGAGCCTAAGCTATCTGAACGGTCAGAGCTTGTCCTTCAGAGTCCAACTCAGTAACCAAAAGATCCTCACAGCTTACAACGTGGTACCTTCCAATTGGAAATTTGGCCAGTCCTTCGTCAGCCGCATTCAGTTCTG 770 0.4662 MEMPAFTASLILLVGFFFTELRVASAAGWLKAHATFYGGSDASGTMGGACGYGNLYTDGYGTNTAALSTALFNDGKSCGGCYQIVCDATQVPQWCIRGRHITITATNFCPPNYALPNDNGGWCNPPRPHFDMSQPAFETIAKYKAGIVPIFYRKVGCKKSGGIRFTINGRDYFELVLISNVGGAGEISRVWIKGSKMSNWESMSRNWGANWQSLSYLNGQSLSFRVQLSNQKILTAYNVVPSNWKFGQSFVSRIQF 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03162 256 PANTHER EXPANSIN-A15 7 256 IPR002963 GO:0009664
Bva13g03162 256 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 162 IPR007112 -
Bva13g03162 256 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 252 IPR007117 -
Bva13g03162 256 PANTHER EXPANSIN 7 256 - -
Bva13g03162 256 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Bva13g03162 256 PRINTS Expansin signature 238 254 IPR002963 GO:0009664
Bva13g03162 256 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Bva13g03162 256 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Bva13g03162 256 PRINTS Expansin signature 209 230 IPR002963 GO:0009664
Bva13g03162 256 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Bva13g03162 256 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Bva13g03162 256 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Bva13g03162 256 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Bva13g03162 256 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Bva13g03162 256 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Bva13g03162 256 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Bva13g03162 256 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Bva13g03162 256 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Bva13g03162 256 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Bva13g03162 256 Pfam Lytic transglycolase 64 152 IPR009009 -
Bva13g03162 256 Pfam Expansin C-terminal domain 163 241 IPR007117 -
Bva13g03162 256 Gene3D - 162 256 IPR036749 -
Bva13g03162 256 SMART dpbb_1 64 152 IPR007112 -
Bva13g03162 256 SUPERFAMILY PHL pollen allergen 159 251 IPR036749 -
Bva13g03162 256 SUPERFAMILY Barwin-like endoglucanases 20 180 IPR036908 -
Bva13g03162 256 Gene3D - 18 158 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03162 Bva-Chr13 22148617 22149582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03162 12 256 Expansin Gene Family AT4G01630 77.510 1.10e-147 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03162 - - gmx:100813434 468.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g03178 04 25950668 25951630 Bva13g03162 13 22148617 22149582 BWGD
Bva13g03162 13 22148617 22149582 Bva13g03162 13 22148617 22149582 ECH