Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03148 atgtctGCAAAGACGCCTGACCCAACCCGGCCAGGGGTGACAAGCAGCTCCTCCCATCTAAGCTCCATGTATGGCAAAGATTTTGTGGAGCTGGCATGGCAAAATGGTCAACTTCTTGTGCAAAGAGGAGTTCCATCAAGTAAAAGACAAGGGAGTTACTCGTGCACTGAGTATTCAGTAAACCCTTCTCATGGCGAAGCTTATGACGAAGACATCTGCATTACGAAAAAAGTAAAGTTAAGCACTTGCTGCTTGGATTTCCCTGCAAGTCACAAGGACTGTAACGTGGACTCTTTACATAAAAACTCACAACGAAGCAATGAACAAAATTGCTATAATCTTGATTTGCCATATACCAAAAGCAAGAACGCCTTTAAGCATATTGTAGATACCATTTTGATGGTGGAAGATAAGTATTCAGACTTTAGAGCAGGAAAAGAACCTAAGCTCGCCGGGGGAACTCATCAGATAGCTTCTTGTGGGAATATCGAATTATGCTCATCTTCCTTACAGCAATGCCCAGCTTCAGCTTCGTTCATAACACCAATATCATTTCCCAGCTCTCAAAAACAAGATTCAAGGACTgttgaaaagattaatttccCCAACTTCGTCAGACCCGCAAAGTATTTCAAATCTACTTACCAGGGCAACAGTGCAACCAGGCAGAGAAACAGTGCTGTTTTAGAAACAGTTAAGGAAATTAAAGCAGGTAAAGATGATCAGAAATCAGTTGCAGCTACCAAAAGTAAAGCTCCTTATCATTCCGTAGTGAATGACTCATCAACTAAAGGTACACACAGTCTCGGAGGATCATTTCAGGAGCAAAAAGCTACTAATGCAAGCCAAGTACCCTTGGTTGCAAAATGTTCTCAGGAATCCCTTCGTGATGAGCGCTCAAAAACTATGGGACATAACAGTGCTCTCAGGATTCAAGGATCCCGCTGTCAAAATTATAACCAAGCCTCCAGCTTAGCAGCAAATAGAGCAAACGGAAAATCTGATACTTACCTTTGCAGTGAACAGTTAGTTCCATCTACTTCTGTATGCTCGCTTGGAGCCTCAAATGACCCAACGTATTTGAGCAGAAAACATGAGCTTGAAGATACCTACGACTCAGCAAATTCAAGTGAGTTGCAGGATGATGATGAACAAGAAGGTTTAAAGAAAGAAGCACCTCCTCGGGTTGTTACAAGAGGCGAGAGAAGCAGGAACGCGAAGATTCACAATCTATCTGAAAAGAAGCGAAGAGATAAGATCAACAAGAAGATGCGTGCATTAAAAGAGCTTATACCCAATTGCAATAAGATGGACAAAGCTTCAATGCTTGACGATGCCATCGAATATCTTAAGACACTGAAGCTTCAATTACAGATTATGTCACTAGGGTCAGGGATGTGTATGCCATTCATGATGTTACCTGCCGGTGCTAATCATCTAAGCAGACTGCATTTAACTCAGTTCCCTCAATTGGGTTTGAGGCCGAGCACAGGCACACCTTGCAATCTACCTCAGTTCCCTCCTCCACAATTTGGACCTGCTTCTCTGCCTGGAATCACAGCTAACAGACTTCAGATGCTTGGTTTCCCCAGTCAAATGCTGCCCATGTCAATTCCTCAAACACTTTTCATGCCTATGCTTGGAAAGCCTTCAACAGTTCTCCCAACCAGCTGTACACCATCCAACCTCGTACAGCATCTTGCTTCTGCCACCTTACACACTTCAAAGGACTCCTCAGTCTCCGACAACGCGGCCTCGAGTCTTATCTACTACATTGCTAAACAACGAGCAACAAATGACACTAAAGCTGATTA 1814 0.4289 MSAKTPDPTRPGVTSSSSHLSSMYGKDFVELAWQNGQLLVQRGVPSSKRQGSYSCTEYSVNPSHGEAYDEDICITKKVKLSTCCLDFPASHKDCNVDSLHKNSQRSNEQNCYNLDLPYTKSKNAFKHIVDTILMVEDKYSDFRAGKEPKLAGGTHQIASCGNIELCSSSLQQCPASASFITPISFPSSQKQDSRTVEKINFPNFVRPAKYFKSTYQGNSATRQRNSAVLETVKEIKAGKDDQKSVAATKSKAPYHSVVNDSSTKGTHSLGGSFQEQKATNASQVPLVAKCSQESLRDERSKTMGHNSALRIQGSRCQNYNQASSLAANRANGKSDTYLCSEQLVPSTSVCSLGASNDPTYLSRKHELEDTYDSANSSELQDDDEQEGLKKEAPPRVVTRGERSRNAKIHNLSEKKRRDKINKKMRALKELIPNCNKMDKASMLDDAIEYLKTLKLQLQIMSLGSGMCMPFMMLPAGANHLSRLHLTQFPQLGLRPSTGTPCNLPQFPPPQFGPASLPGITANRLQMLGFPSQMLPMSIPQTLFMPMLGKPSTVLPTSCTPSNLVQHLASATLHTSKDSSVSDNAASSLIYYIAKQRATNDTKAD 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03148 604 MobiDBLite consensus disorder prediction 382 403 - -
Bva13g03148 604 SMART finulus 410 459 IPR011598 GO:0046983
Bva13g03148 604 MobiDBLite consensus disorder prediction 1 20 - -
Bva13g03148 604 Pfam Helix-loop-helix DNA-binding domain 409 453 IPR011598 GO:0046983
Bva13g03148 604 PANTHER TRANSCRIPTION FACTOR PIF3 19 580 IPR044273 GO:0003700|GO:0006355
Bva13g03148 604 MobiDBLite consensus disorder prediction 241 271 - -
Bva13g03148 604 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 402 463 IPR036638 GO:0046983
Bva13g03148 604 MobiDBLite consensus disorder prediction 369 403 - -
Bva13g03148 604 CDD bHLH_AtPIF_like 404 466 - -
Bva13g03148 604 Gene3D - 400 461 IPR036638 GO:0046983
Bva13g03148 604 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 404 453 IPR011598 GO:0046983
Bva13g03148 604 PANTHER TRANSCRIPTION FACTOR PIF3-LIKE 19 580 - -
Bva13g03148 604 MobiDBLite consensus disorder prediction 254 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03148 Bva-Chr13 22081796 22084565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03148 340 479 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 49.306 7.85e-33 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva13g03148 HLH 7.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03148 K12126 - jre:109007770 308.145
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g03166 04 25887224 25890073 Bva13g03148 13 22081796 22084565 BWGD