Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03144 ATGGGCAGAGCCTCCAGTTCTTCCTCGTCTTCTATTAGCAGCACCAACCAGAATGCTTCCTCTCTCACACACCAAAACTCAGGCCTTCCCACAGATCTTAGGCTTGGACTTAGCATTTTTGCTCCTCAACAAGCAGTGGGCCATTCTCTTTCAAGGGGGGAAGCATCAGATTTGGCACCAACCCAGCAACCATTTGCTGCTGCTGAAGCATATGATTGCAATGATAATCATAGCAGCTTCTTTGTGAAGGTCTACATGGAAGGCATTCCAATTGGGAGAAAACTTGATGTACTAGCTCATGATGGGTACCCTGAGTTAGTGAAGACTCTTGAGCACATGTTTGACACTACCATTCTCTGGGGAACTGAGATGGACGGAGTGCAGTCAGACAGATGTCATGTGCTAACTTACGAAGACGAAGAAGGGGACTTCTTGATGGTTGGGGATGTTCCTTGGGAAATGTTTTTATCCACCGTAAAGAGATTGAAGATCACCAGAATAGAGACATTTAGATGTTG 518 0.4575 MGRASSSSSSSISSTNQNASSLTHQNSGLPTDLRLGLSIFAPQQAVGHSLSRGEASDLAPTQQPFAAAEAYDCNDNHSSFFVKVYMEGIPIGRKLDVLAHDGYPELVKTLEHMFDTTILWGTEMDGVQSDRCHVLTYEDEEGDFLMVGDVPWEMFLSTVKRLKITRIETFRC 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03144 172 PANTHER AUXIN-INDUCED PROTEIN 4 170 - -
Bva13g03144 172 SUPERFAMILY CAD & PB1 domains 76 166 - -
Bva13g03144 172 MobiDBLite consensus disorder prediction 1 27 - -
Bva13g03144 172 Pfam AUX/IAA family 71 166 IPR033389 -
Bva13g03144 172 Gene3D - 73 171 - -
Bva13g03144 172 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 170 IPR003311 GO:0005634|GO:0006355
Bva13g03144 172 ProSiteProfiles PB1 domain profile. 79 172 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03144 Bva-Chr13 22060474 22061593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03144 83 171 B3 DNA Binding Superfamily AT4G23980 35.955 7.42e-13 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Bva13g03144 AUX_IAA 4.9e-29 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03144 K14484 - gmx:100818376 218.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g03162 04 25873064 25873898 Bva13g03144 13 22060474 22061593 BWGD