Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g03127 atgagaggGAAAGCGTTAGTCTCCACCGTCTCACTCATCCTCGTGGTGGGTGTGATTGTTGGCGTCGTTGCCGTCGTTAACATCAAGAAAGATAACAACCATTCCGCAACAGCAAACGTTAAAGCTGTTCAAAACATTTGCCAGAATGCAGAAGACCAAAAGCTTTGCCGTGAAACCCTTATCCCCGCCAAGGGCTCTCCCGATGACCCAAAAGCGTACTTCAAGACCGCAATAGAAGCAGCCACCAACAGCATCATCAAGGCCTTAAACATGTCTGATAAGCTCTCCGTCGAGCATGGCAACAAAGACCCAGGCATCAAGATGGCCCTTGATGACTGCAGAGATTTGATGCAATACTCCATAGCGAACCTTCAATCGTCGGCTGACTTGGTTAACAACAACGACATCCTAACCGTTCACTACCGCACCGACGACTTCAAGAATTGGTTAACTTCCACCATCGCATGTCAGCAAACTTGTATGGACGGTTTTGACACAGACGGTGAGAAGAAGGTGCAGGAACTATTGCAGTCTAATGGCTTGGACGATATGGGAAAACTCACTGGCATGACACTTGACATTGTGGCCAGCTTTGCCAAGATTCTCGAGTCATTCAACTTGAACTTGAAAGTGAACCCTTCTAATAATCGTCGTCTTCTTAACGTTGAGGTGGACAAGGAAGGGTTCCCTACATGGTTCTCCGCTGCTGATCGCAAGCTCTTGCGTAAGTTTGGTAAGGGAGGGCATCGTCGGGGATCAATAGGAATGGCGGCCAATGCAGTTGTTGCCCAAGATGGCAGTGGCACTCATAAGACCATTGCTGATGCTATTGCTGCTGTTCCTAAGAAATCAAGTGCTAGATTTGTTATCTACGTTAAGGCTGGAATCTACAATGAGAACGTTATCGTTCCCAATGATGTCTACAATGTGCTTATGTACGGTGATGGCCCTACAAGGACCATTGTCACTGGCCATAAGAACTTCGCAGCTGGCACCAAGACAATGAACACTGCTACATTCGctGCTGTTGGAAATGGATTCATTGCCAAGTCAATAGGATTTGAGAACACTGCTGGTTGGGCAGGGCACCAAGCTGTGGCACTTCGCGTGCAAAGTGATATGTCTGCTTTCTTCGACTGTGCAATTCATGGTTACCAAGACAGCTTGTATCTTCAATCCGATCGTCAGTTCTACCGTAATTGTGAAATCTCTGGTACCGTCGACTTCATTTTCGGGACGTCAACCTCATTGATCCAAAACTCAAAGATCATTGTAAGGAGACCCGGCCCAAAGCAATTTAACACAGTAACTGCAGATGGCTCAACCCAGAAAACCATGATTTCTGGCATTGTGATCCAAAATTGTGAAATCGTCCCAGAAAATGAACTCTTCCCTGTAAGATTCCAGGTGAGATCCTATTTGGGAAGGCCGTGGAAGGCATACTCAAGGACAGTGATTATGGAATCTACCATCGGTGACTTCATTCAACCAGATGGGTGGGCCCCGTGGAGTGGAAACTCGTACCTTAATACTTTGTACTATGCTGAGTATAACAATAGGGGCCCTGGTGCTGCCCTGGATAGAAGGGTTAGATGGAAGGGTTACCGTGGAGCTATCAGCAGGGCCGAAGCTAACCAGTTCACTGCTGATGTGTTCCTTAAGGGTGGCGCCACCGGTTCTTCTGATTGGTTGAGGGTTACTGGAATTCCCTACCAGCTTAGCTTCACCACTGCTTG 1736 0.4718 MRGKALVSTVSLILVVGVIVGVVAVVNIKKDNNHSATANVKAVQNICQNAEDQKLCRETLIPAKGSPDDPKAYFKTAIEAATNSIIKALNMSDKLSVEHGNKDPGIKMALDDCRDLMQYSIANLQSSADLVNNNDILTVHYRTDDFKNWLTSTIACQQTCMDGFDTDGEKKVQELLQSNGLDDMGKLTGMTLDIVASFAKILESFNLNLKVNPSNNRRLLNVEVDKEGFPTWFSAADRKLLRKFGKGGHRRGSIGMAANAVVAQDGSGTHKTIADAIAAVPKKSSARFVIYVKAGIYNENVIVPNDVYNVLMYGDGPTRTIVTGHKNFAAGTKTMNTATFAAVGNGFIAKSIGFENTAGWAGHQAVALRVQSDMSAFFDCAIHGYQDSLYLQSDRQFYRNCEISGTVDFIFGTSTSLIQNSKIIVRRPGPKQFNTVTADGSTQKTMISGIVIQNCEIVPENELFPVRFQVRSYLGRPWKAYSRTVIMESTIGDFIQPDGWAPWSGNSYLNTLYYAEYNNRGPGAALDRRVRWKGYRGAISRAEANQFTADVFLKGGATGSSDWLRVTGIPYQLSFTTA 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g03127 578 Coils Coil 33 53 - -
Bva13g03127 578 SUPERFAMILY Pectin lyase-like 255 571 IPR011050 -
Bva13g03127 578 TIGRFAM PME_inhib: pectinesterase inhibitor domain 31 194 IPR006501 GO:0004857
Bva13g03127 578 CDD PMEI-like_3 46 200 - -
Bva13g03127 578 ProSitePatterns Pectinesterase signature 1. 284 303 IPR018040 -
Bva13g03127 578 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 196 IPR035513 -
Bva13g03127 578 Pfam Plant invertase/pectin methylesterase inhibitor 42 193 IPR006501 GO:0004857
Bva13g03127 578 PANTHER PECTINESTERASE 3 574 - -
Bva13g03127 578 SMART PMEI_2 38 194 IPR006501 GO:0004857
Bva13g03127 578 PANTHER PECTINESTERASE 3 574 - -
Bva13g03127 578 ProSitePatterns Pectinesterase signature 2. 403 412 IPR033131 -
Bva13g03127 578 Gene3D - 254 575 IPR012334 -
Bva13g03127 578 Pfam Pectinesterase 259 555 IPR000070 GO:0030599|GO:0042545
Bva13g03127 578 Gene3D Invertase/pectin methylesterase inhibitor family protein 40 198 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g03127 Bva-Chr13 21977607 21979501 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g03127 1 575 Carbohydrate Esterase AT2G47040 40.132 1.61e-138 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g03127 K01051 - gmx:100775246 679.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g03127 13 21977607 21979501 Bva04g03146 04 25782907 25788577 BWGD